Difference between revisions of "TSS:Hg 87556.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|RET/PCM-1= | |RET/PCM-1= | ||
| − | |all_trans=ENST00000325083.12 | + | |all_trans=ENST00000325083.12:26 L27841:33 NM_001352660:43 NM_001352659:43 NM_001315508:43 LF384362:43 MA619939:43 ENST00000518930.1:154 NM_001352653:174 NM_001352649:174 NM_001352648:174 NM_001352654:174 NM_001352636:174 NM_001352652:174 NM_001352633:174 NM_001352637:174 NM_001352657:174 NM_001352635:174 NM_001352644:174 NM_001352640:174 NM_001352638:174 NM_001352647:174 NM_001352646:174 NM_001352632:174 NM_001352658:174 NM_001352655:174 NM_001352650:174 NM_001315507:174 NM_006197:174 NM_001352642:174 NM_001352634:174 NM_001352645:174 NM_001352643:174 NM_001352656:174 NM_001352641:174 NM_001352639:174 NM_001352651:174 NR_148032:174 ENST00000517545.5:176 ENST00000517730.5:176 BC098391:176 AK307583:176 ENST00000518537.5:185 BC000453:185 ENST00000518936.5:192 BC065022:192 ENST00000523055.5:196 BC027477:196 LF372130:212 MA607707:212 ENST00000519253.5:214 BC140946:214 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
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|entrez_id=5108 | |entrez_id=5108 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
| − | |gene_alias=PTC4 | + | |gene_alias=PTC4{{!}}RET/PCM-1 |
|gene_description=pericentriolar material 1 | |gene_description=pericentriolar material 1 | ||
|gene_id=5108 | |gene_id=5108 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:8727 | |hgnc_mgi_id=HGNC:8727 | ||
|nearest_ensembl=ENSG00000078674 | |nearest_ensembl=ENSG00000078674 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001352660 |
|nearest_refseq=NM_006197 | |nearest_refseq=NM_006197 | ||
|nearest_unigene=Hs.491148 | |nearest_unigene=Hs.491148 | ||
| − | |num_trans= | + | |num_trans=52 |
|species=human | |species=human | ||
|start=17922797 | |start=17922797 | ||
|start_of_center_position=17922805 | |start_of_center_position=17922805 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=4(GCTTAAAGAGCC,+,0.00) |
| − | |transcript_name=ENST00000325083.12 | + | |transcript_name=ENST00000325083.12 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_87556.1 | |tss_id=hg_87556.1 | ||
Revision as of 17:27, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17922805 |
|---|---|
| End of the center position in the TSS region: | 17922806 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000325083.12 |
|---|---|
| Distance: | 26 |
| Num_trans: | 52 |
| All_trans: | ENST00000325083.12:26 L27841:33 NM_001352660:43 NM_001352659:43 NM_001315508:43 LF384362:43 MA619939:43 ENST00000518930.1:154 NM_001352653:174 NM_001352649:174 NM_001352648:174 NM_001352654:174 NM_001352636:174 NM_001352652:174 NM_001352633:174 NM_001352637:174 NM_001352657:174 NM_001352635:174 NM_001352644:174 NM_001352640:174 NM_001352638:174 NM_001352647:174 NM_001352646:174 NM_001352632:174 NM_001352658:174 NM_001352655:174 NM_001352650:174 NM_001315507:174 NM_006197:174 NM_001352642:174 NM_001352634:174 NM_001352645:174 NM_001352643:174 NM_001352656:174 NM_001352641:174 NM_001352639:174 NM_001352651:174 NR_148032:174 ENST00000517545.5:176 ENST00000517730.5:176 BC098391:176 AK307583:176 ENST00000518537.5:185 BC000453:185 ENST00000518936.5:192 BC065022:192 ENST00000523055.5:196 BC027477:196 LF372130:212 MA607707:212 ENST00000519253.5:214 BC140946:214 |
TATA-Box annotation
| Distance to TSS: | -51 |
|---|---|
| Nearest PromoterID: | NM_001352660 |
| Entrez ID: | 5108 |
| Nearest Unigene: | Hs.491148 |
| Nearest Refseq: | NM_006197 |
| Nearest Ensembl: | ENSG00000078674 |
| Gene Name: | pericentriolar material 1 |
| Gene Alias: | PTC4|RET/PCM-1 |
| Gene Description: | pericentriolar material 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 4(GCTTAAAGAGCC,+,0.00) |
