Difference between revisions of "TSS:Hg 87557.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|RET/PCM-1= | |RET/PCM-1= | ||
| − | |all_trans=ENST00000325083.12:0 | + | |all_trans=ENST00000325083.12:0 NM_001352660:0 NM_001352659:0 NM_001315508:0 L27841:0 LF384362:0 MA619939:0 ENST00000518930.1:102 NM_001352653:122 NM_001352649:122 NM_001352648:122 NM_001352654:122 NM_001352636:122 NM_001352652:122 NM_001352633:122 NM_001352637:122 NM_001352657:122 NM_001352635:122 NM_001352644:122 NM_001352640:122 NM_001352638:122 NM_001352647:122 NM_001352646:122 NM_001352632:122 NM_001352658:122 NM_001352655:122 NM_001352650:122 NM_001315507:122 NM_006197:122 NM_001352642:122 NM_001352634:122 NM_001352645:122 NM_001352643:122 NM_001352656:122 NM_001352641:122 NM_001352639:122 NM_001352651:122 NR_148032:122 ENST00000517545.5:124 ENST00000517730.5:124 BC098391:124 AK307583:124 ENST00000518537.5:133 BC000453:133 ENST00000518936.5:140 BC065022:140 ENST00000523055.5:144 BC027477:144 LF372130:160 MA607707:160 ENST00000519253.5:162 BC140946:162 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
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|entrez_id=5108 | |entrez_id=5108 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias=PTC4 | + | |gene_alias=PTC4{{!}}RET/PCM-1 |
|gene_description=pericentriolar material 1 | |gene_description=pericentriolar material 1 | ||
|gene_id=5108 | |gene_id=5108 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:8727 | |hgnc_mgi_id=HGNC:8727 | ||
|nearest_ensembl=ENSG00000078674 | |nearest_ensembl=ENSG00000078674 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001352660 |
|nearest_refseq=NM_006197 | |nearest_refseq=NM_006197 | ||
|nearest_unigene=Hs.491148 | |nearest_unigene=Hs.491148 | ||
| − | |num_trans= | + | |num_trans=52 |
|species=human | |species=human | ||
|start=17922837 | |start=17922837 | ||
|start_of_center_position=17922851 | |start_of_center_position=17922851 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-42(GCTTAAAGAGCC,+,0.00) |
| − | |transcript_name=ENST00000325083.12 | + | |transcript_name=ENST00000325083.12 NM_001352660 NM_001352659 NM_001315508 L27841 LF384362 MA619939 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_87557.1 | |tss_id=hg_87557.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q15154 |
}} | }} | ||
Revision as of 17:27, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17922851 |
|---|---|
| End of the center position in the TSS region: | 17922852 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000325083.12 NM_001352660 NM_001352659 NM_001315508 L27841 LF384362 MA619939 |
|---|---|
| Distance: | 0 |
| Num_trans: | 52 |
| All_trans: | ENST00000325083.12:0 NM_001352660:0 NM_001352659:0 NM_001315508:0 L27841:0 LF384362:0 MA619939:0 ENST00000518930.1:102 NM_001352653:122 NM_001352649:122 NM_001352648:122 NM_001352654:122 NM_001352636:122 NM_001352652:122 NM_001352633:122 NM_001352637:122 NM_001352657:122 NM_001352635:122 NM_001352644:122 NM_001352640:122 NM_001352638:122 NM_001352647:122 NM_001352646:122 NM_001352632:122 NM_001352658:122 NM_001352655:122 NM_001352650:122 NM_001315507:122 NM_006197:122 NM_001352642:122 NM_001352634:122 NM_001352645:122 NM_001352643:122 NM_001352656:122 NM_001352641:122 NM_001352639:122 NM_001352651:122 NR_148032:122 ENST00000517545.5:124 ENST00000517730.5:124 BC098391:124 AK307583:124 ENST00000518537.5:133 BC000453:133 ENST00000518936.5:140 BC065022:140 ENST00000523055.5:144 BC027477:144 LF372130:160 MA607707:160 ENST00000519253.5:162 BC140946:162 |
TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NM_001352660 |
| Entrez ID: | 5108 |
| Nearest Unigene: | Hs.491148 |
| Nearest Refseq: | NM_006197 |
| Nearest Ensembl: | ENSG00000078674 |
| Gene Name: | pericentriolar material 1 |
| Gene Alias: | PTC4|RET/PCM-1 |
| Gene Description: | pericentriolar material 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -42(GCTTAAAGAGCC,+,0.00) |
