Difference between revisions of "TSS:Hg 87560.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|RET/PCM-1= | |RET/PCM-1= | ||
| − | |all_trans=ENST00000519253.5:-112 | + | |all_trans=ENST00000519253.5:-112 BC140946:-112 LF372130:-114 MA607707:-114 ENST00000523055.5:-130 BC027477:-130 ENST00000518936.5:-134 BC065022:-134 ENST00000518537.5:-141 BC000453:-141 ENST00000517545.5:-150 ENST00000517730.5:-150 BC098391:-150 AK307583:-150 NM_001352653:-152 NM_001352649:-152 NM_001352648:-152 NM_001352654:-152 NM_001352636:-152 NM_001352652:-152 NM_001352633:-152 NM_001352637:-152 NM_001352657:-152 NM_001352635:-152 NM_001352644:-152 NM_001352640:-152 NM_001352638:-152 NM_001352647:-152 NM_001352646:-152 NM_001352632:-152 NM_001352658:-152 NM_001352655:-152 NM_001352650:-152 NM_001315507:-152 NM_006197:-152 NM_001352642:-152 NM_001352634:-152 NM_001352645:-152 NM_001352643:-152 NM_001352656:-152 NM_001352641:-152 NM_001352639:-152 NM_001352651:-152 NR_148032:-152 ENST00000518930.1:-172 NM_001352660:-283 NM_001352659:-283 NM_001315508:-283 LF384362:-283 MA619939:-283 L27841:-293 ENST00000325083.12:-300 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|distance=-112 | |distance=-112 | ||
| − | |distance_to_tss= | + | |distance_to_tss=157 |
|end=17923150 | |end=17923150 | ||
|end_of_center_position=17923145 | |end_of_center_position=17923145 | ||
|entrez_id=5108 | |entrez_id=5108 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias=PTC4 | + | |gene_alias=PTC4{{!}}RET/PCM-1 |
|gene_description=pericentriolar material 1 | |gene_description=pericentriolar material 1 | ||
|gene_id=5108 | |gene_id=5108 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:8727 | |hgnc_mgi_id=HGNC:8727 | ||
|nearest_ensembl=ENSG00000078674 | |nearest_ensembl=ENSG00000078674 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001352656 |
|nearest_refseq=NM_006197 | |nearest_refseq=NM_006197 | ||
|nearest_unigene=Hs.491148 | |nearest_unigene=Hs.491148 | ||
| − | |num_trans= | + | |num_trans=52 |
|species=human | |species=human | ||
|start=17923139 | |start=17923139 | ||
|start_of_center_position=17923144 | |start_of_center_position=17923144 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000519253.5 | + | |transcript_name=ENST00000519253.5 BC140946 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_87560.1 | |tss_id=hg_87560.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B9EIS5 | + | |uniprot_id=A0A5H1ZRS1 B9EIS5 |
}} | }} | ||
Revision as of 17:27, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17923144 |
|---|---|
| End of the center position in the TSS region: | 17923145 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000519253.5 BC140946 |
|---|---|
| Distance: | -112 |
| Num_trans: | 52 |
| All_trans: | ENST00000519253.5:-112 BC140946:-112 LF372130:-114 MA607707:-114 ENST00000523055.5:-130 BC027477:-130 ENST00000518936.5:-134 BC065022:-134 ENST00000518537.5:-141 BC000453:-141 ENST00000517545.5:-150 ENST00000517730.5:-150 BC098391:-150 AK307583:-150 NM_001352653:-152 NM_001352649:-152 NM_001352648:-152 NM_001352654:-152 NM_001352636:-152 NM_001352652:-152 NM_001352633:-152 NM_001352637:-152 NM_001352657:-152 NM_001352635:-152 NM_001352644:-152 NM_001352640:-152 NM_001352638:-152 NM_001352647:-152 NM_001352646:-152 NM_001352632:-152 NM_001352658:-152 NM_001352655:-152 NM_001352650:-152 NM_001315507:-152 NM_006197:-152 NM_001352642:-152 NM_001352634:-152 NM_001352645:-152 NM_001352643:-152 NM_001352656:-152 NM_001352641:-152 NM_001352639:-152 NM_001352651:-152 NR_148032:-152 ENST00000518930.1:-172 NM_001352660:-283 NM_001352659:-283 NM_001315508:-283 LF384362:-283 MA619939:-283 L27841:-293 ENST00000325083.12:-300 |
TATA-Box annotation
| Distance to TSS: | 157 |
|---|---|
| Nearest PromoterID: | NM_001352656 |
| Entrez ID: | 5108 |
| Nearest Unigene: | Hs.491148 |
| Nearest Refseq: | NM_006197 |
| Nearest Ensembl: | ENSG00000078674 |
| Gene Name: | pericentriolar material 1 |
| Gene Alias: | PTC4|RET/PCM-1 |
| Gene Description: | pericentriolar material 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
