Difference between revisions of "TSS:Hg 87734.1"
From referenceTSS
| Line 4: | Line 4: | ||
|PCP2= | |PCP2= | ||
|TLD= | |TLD= | ||
| − | |all_trans=ENST00000520970.5 | + | |all_trans=ENST00000520970.5:0 AB209590:0 ENST00000518913.5:35 BC002593:35 BC009305:35 BC032105:35 BC044626:35 ENST00000397814.7:-47 ENST00000354870.5:-47 BC142953:59 AK291620:70 ENST00000520982.5:107 ENST00000520626.6:107 BC136679:107 BC144365:107 BC144366:107 ENST00000518656.5:118 BC101763:118 BC101765:118 BC143338:118 ENST00000306349.13:155 ENST00000306385.10:155 NM_001199:155 NR_033403:155 NM_006129:155 NR_033404:155 M22488:160 ENST00000471755.5:183 ENST00000483364.5:183 ENST00000521385.5:183 Y08723:183 Y08724:183 Y08725:183 AB527418:188 KJ896503:188 U50330:189 LF212583:-477 MA448160:-477 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-170 |
|end=22165217 | |end=22165217 | ||
|end_of_center_position=22165202 | |end_of_center_position=22165202 | ||
|entrez_id=649 | |entrez_id=649 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=OI13 | + | |gene_alias=OI13{{!}}PCOLC{{!}}PCP{{!}}PCP2{{!}}TLD |
|gene_description=bone morphogenetic protein 1 | |gene_description=bone morphogenetic protein 1 | ||
|gene_id=649 | |gene_id=649 | ||
| Line 19: | Line 19: | ||
|gene_source=HGNC:1067 | |gene_source=HGNC:1067 | ||
|gene_symbol=BMP1 | |gene_symbol=BMP1 | ||
| − | |gene_synonyms= | + | |gene_synonyms=BMP-1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:1067 | |hgnc_mgi_id=HGNC:1067 | ||
|nearest_ensembl=ENSG00000168487 | |nearest_ensembl=ENSG00000168487 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_006129 |
|nearest_refseq=NM_001199 | |nearest_refseq=NM_001199 | ||
|nearest_unigene=Hs.1274 | |nearest_unigene=Hs.1274 | ||
| − | |num_trans= | + | |num_trans=38 |
|species=human | |species=human | ||
|start=22165186 | |start=22165186 | ||
|start_of_center_position=22165201 | |start_of_center_position=22165201 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-84(TTCCCTAAAAAG,-,0.00),-82(CCCTAAAAAGGG,+,0.00) |
| − | |transcript_name=ENST00000520970.5 | + | |transcript_name=ENST00000520970.5 AB209590 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_87734.1 | |tss_id=hg_87734.1 | ||
Revision as of 17:31, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 22165201 |
|---|---|
| End of the center position in the TSS region: | 22165202 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000520970.5 AB209590 |
|---|---|
| Distance: | 0 |
| Num_trans: | 38 |
| All_trans: | ENST00000520970.5:0 AB209590:0 ENST00000518913.5:35 BC002593:35 BC009305:35 BC032105:35 BC044626:35 ENST00000397814.7:-47 ENST00000354870.5:-47 BC142953:59 AK291620:70 ENST00000520982.5:107 ENST00000520626.6:107 BC136679:107 BC144365:107 BC144366:107 ENST00000518656.5:118 BC101763:118 BC101765:118 BC143338:118 ENST00000306349.13:155 ENST00000306385.10:155 NM_001199:155 NR_033403:155 NM_006129:155 NR_033404:155 M22488:160 ENST00000471755.5:183 ENST00000483364.5:183 ENST00000521385.5:183 Y08723:183 Y08724:183 Y08725:183 AB527418:188 KJ896503:188 U50330:189 LF212583:-477 MA448160:-477 |
TATA-Box annotation
| Distance to TSS: | -170 |
|---|---|
| Nearest PromoterID: | NM_006129 |
| Entrez ID: | 649 |
| Nearest Unigene: | Hs.1274 |
| Nearest Refseq: | NM_001199 |
| Nearest Ensembl: | ENSG00000168487 |
| Gene Name: | bone morphogenetic protein 1 |
| Gene Alias: | OI13|PCOLC|PCP|PCP2|TLD |
| Gene Description: | bone morphogenetic protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -84(TTCCCTAAAAAG,-,0.00),-82(CCCTAAAAAGGG,+,0.00) |
