Difference between revisions of "TSS:Hg 92010.1"
From referenceTSS
| Line 4: | Line 4: | ||
|MP44= | |MP44= | ||
|MTSG1= | |MTSG1= | ||
| − | |all_trans=BC117564:81 BC140067:98 BC140068:98 KJ899344:98 AF121259:99 AF293357:-164 BC017740:-174 ENST00000297488.10 | + | |all_trans=BC117564:81 BC140067:98 BC140068:98 KJ899344:98 AF121259:99 AF293357:-164 BC017740:-174 ENST00000297488.10:-184 BC098381:-184 BC142971:-184 AK314692:-184 FJ472827:-185 NM_020749:-251 AK289750:-251 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 13: | Line 13: | ||
|entrez_id=57509 | |entrez_id=57509 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| − | |gene_alias=ATBP | + | |gene_alias=ATBP{{!}}ATIP{{!}}ATIP3{{!}}ICIS{{!}}MP44{{!}}MTSG1 |
| − | |gene_description=microtubule associated | + | |gene_description=microtubule associated scaffold protein 1 |
|gene_id=57509 | |gene_id=57509 | ||
| − | |gene_name=microtubule associated | + | |gene_name=microtubule associated scaffold protein 1 |
|gene_source=HGNC:29789 | |gene_source=HGNC:29789 | ||
|gene_symbol=MTUS1 | |gene_symbol=MTUS1 | ||
| − | |gene_synonyms=ATBP ATIP1 DKFZp586D1519 FLJ14295 ICIS KIAA1288 MP44 MTSG1 | + | |gene_synonyms=ATBP ATIP1 ATIP3 DKFZp586D1519 FLJ14295 ICIS KIAA1288 MP44 MTSG1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:29789 | |hgnc_mgi_id=HGNC:29789 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_020749 | |nearest_refseq=NM_020749 | ||
|nearest_unigene=Hs.7946 | |nearest_unigene=Hs.7946 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=17697475 | |start=17697475 | ||
|start_of_center_position=17697480 | |start_of_center_position=17697480 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=29(GAGTTTAAAAAG,-,0.00),31(GTTTAAAAAGAC,+,0.00) |
|transcript_name=BC117564 | |transcript_name=BC117564 | ||
|tss_classification=no | |tss_classification=no | ||
Revision as of 19:10, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17697480 |
|---|---|
| End of the center position in the TSS region: | 17697481 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC117564 |
|---|---|
| Distance: | 81 |
| Num_trans: | 14 |
| All_trans: | BC117564:81 BC140067:98 BC140068:98 KJ899344:98 AF121259:99 AF293357:-164 BC017740:-174 ENST00000297488.10:-184 BC098381:-184 BC142971:-184 AK314692:-184 FJ472827:-185 NM_020749:-251 AK289750:-251 |
TATA-Box annotation
| Distance to TSS: | 256 |
|---|---|
| Nearest PromoterID: | NM_020749 |
| Entrez ID: | 57509 |
| Nearest Unigene: | Hs.7946 |
| Nearest Refseq: | NM_020749 |
| Nearest Ensembl: | ENSG00000129422 |
| Gene Name: | microtubule associated scaffold protein 1 |
| Gene Alias: | ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 |
| Gene Description: | microtubule associated scaffold protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 29(GAGTTTAAAAAG,-,0.00),31(GTTTAAAAAGAC,+,0.00) |
