Difference between revisions of "TSS:Hg 92919.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000524237 | + | |all_trans=ENST00000524237.1:18 ENST00000518384.1:148 BC028600:-192 GQ900924:-192 LF384344:-192 MA619921:-192 ENST00000342228.7:-193 ENST00000520179.5:217 NM_001257181:217 AK314774:217 NM_006749:-221 ENST00000523340.1:226 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
|distance=18 | |distance=18 | ||
| − | |distance_to_tss= | + | |distance_to_tss=146 |
|end=42541733 | |end=42541733 | ||
|end_of_center_position=42541731 | |end_of_center_position=42541731 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:10947 | |hgnc_mgi_id=HGNC:10947 | ||
|nearest_ensembl=ENSG00000176209 | |nearest_ensembl=ENSG00000176209 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_138436 |
|nearest_refseq=NM_138436 | |nearest_refseq=NM_138436 | ||
|nearest_unigene=Hs.655320 | |nearest_unigene=Hs.655320 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=42541728 | |start=42541728 | ||
|start_of_center_position=42541730 | |start_of_center_position=42541730 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000524237 | + | |transcript_name=ENST00000524237.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_92919.1 | |tss_id=hg_92919.1 | ||
Revision as of 19:32, 18 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 42541730 |
|---|---|
| End of the center position in the TSS region: | 42541731 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000524237.1 |
|---|---|
| Distance: | 18 |
| Num_trans: | 12 |
| All_trans: | ENST00000524237.1:18 ENST00000518384.1:148 BC028600:-192 GQ900924:-192 LF384344:-192 MA619921:-192 ENST00000342228.7:-193 ENST00000520179.5:217 NM_001257181:217 AK314774:217 NM_006749:-221 ENST00000523340.1:226 |
TATA-Box annotation
| Distance to TSS: | 146 |
|---|---|
| Nearest PromoterID: | NM_138436 |
| Entrez ID: | 114926 |
| Nearest Unigene: | Hs.655320 |
| Nearest Refseq: | NM_138436 |
| Nearest Ensembl: | ENSG00000176209 |
| Gene Name: | solute carrier family 20 member 2 |
| Gene Alias: | C8orf40 |
| Gene Description: | small integral membrane protein 19 |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.835821 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
