Difference between revisions of "TSS:Hg 98092.1"
From referenceTSS
| Line 2: | Line 2: | ||
|CHRAC17= | |CHRAC17= | ||
|YBL1= | |YBL1= | ||
| − | |all_trans= | + | |all_trans=ENST00000374165.6:-23 NM_152786:-23 NM_001278630:-23 NM_001278629:-23 ENST00000288462.4:-28 BC026884:-28 AK301872:-61 BC033037:-84 AK313867:-115 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| − | |distance=- | + | |distance=-23 |
|distance_to_tss=-33 | |distance_to_tss=-33 | ||
|end=113410794 | |end=113410794 | ||
| Line 11: | Line 11: | ||
|entrez_id=54107 | |entrez_id=54107 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=CHARAC17 | + | |gene_alias=CHARAC17{{!}}CHRAC17{{!}}CHRAC2{{!}}YBL1{{!}}p17 |
| − | |gene_description= | + | |gene_description=DNA polymerase epsilon 3, accessory subunit |
|gene_id=257169 | |gene_id=257169 | ||
|gene_name=chromosome 9 open reading frame 43 | |gene_name=chromosome 9 open reading frame 43 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:23570 | |hgnc_mgi_id=HGNC:23570 | ||
|nearest_ensembl=ENSG00000148229 | |nearest_ensembl=ENSG00000148229 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001278255 |
|nearest_refseq=NM_017443 | |nearest_refseq=NM_017443 | ||
|nearest_unigene=Hs.108112 | |nearest_unigene=Hs.108112 | ||
| − | |num_trans= | + | |num_trans=9 |
|p17= | |p17= | ||
|species=human | |species=human | ||
| Line 30: | Line 30: | ||
|start_of_center_position=113410781 | |start_of_center_position=113410781 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000374165.6 NM_152786 NM_001278630 NM_001278629 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_98092.1 | |tss_id=hg_98092.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A024R879 Q8TAL5 | + | |uniprot_id=A0A024R879 B4DX97 Q8TAL5 |
}} | }} | ||
Revision as of 21:32, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 113410781 |
|---|---|
| End of the center position in the TSS region: | 113410782 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374165.6 NM_152786 NM_001278630 NM_001278629 |
|---|---|
| Distance: | -23 |
| Num_trans: | 9 |
| All_trans: | ENST00000374165.6:-23 NM_152786:-23 NM_001278630:-23 NM_001278629:-23 ENST00000288462.4:-28 BC026884:-28 AK301872:-61 BC033037:-84 AK313867:-115 |
TATA-Box annotation
| Distance to TSS: | -33 |
|---|---|
| Nearest PromoterID: | NM_001278255 |
| Entrez ID: | 54107 |
| Nearest Unigene: | Hs.108112 |
| Nearest Refseq: | NM_017443 |
| Nearest Ensembl: | ENSG00000148229 |
| Gene Name: | chromosome 9 open reading frame 43 |
| Gene Alias: | CHARAC17|CHRAC17|CHRAC2|YBL1|p17 |
| Gene Description: | DNA polymerase epsilon 3, accessory subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
