Difference between revisions of "TSS:Hg 99999.1"
From referenceTSS
| Line 7: | Line 7: | ||
|NFIB2= | |NFIB2= | ||
|NFIB3= | |NFIB3= | ||
| − | |all_trans=ENST00000397575.7 | + | |all_trans=ENST00000380953.6:0 NM_001369461:0 NM_001369471:0 NM_001369464:0 NM_001369475:0 NM_001369477:0 NM_001190737:0 NM_001369481:0 ENST00000397575.7:64 NM_005596:87 BX648845:87 ENST00000380959.7:148 ENST00000622520.1:170 U70862:170 ENST00000380921.3:176 LF355359:222 MA590936:222 AK299605:224 ENST00000636063.1:290 LF355360:-354 MA590937:-354 ENST00000397581.6:-371 U85193:413 ENST00000397579.6:-434 LF355358:462 MA590935:462 BC001283:464 AK290603:474 ENST00000637742.1:485 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=1 |
|end=14314148 | |end=14314148 | ||
|end_of_center_position=14314141 | |end_of_center_position=14314141 | ||
|entrez_id=4781 | |entrez_id=4781 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
| − | |gene_alias=CTF | + | |gene_alias=CTF{{!}}HMGIC/NFIB{{!}}MACID{{!}}NF-I/B{{!}}NF1-B{{!}}NFI-B{{!}}NFI-RED{{!}}NFIB2{{!}}NFIB3 |
|gene_description=nuclear factor I B | |gene_description=nuclear factor I B | ||
|gene_id=4781 | |gene_id=4781 | ||
| − | |gene_name=nuclear factor I | + | |gene_name=nuclear factor I B |
|gene_source=HGNC:7785 | |gene_source=HGNC:7785 | ||
|gene_symbol=NFIB | |gene_symbol=NFIB | ||
| Line 26: | Line 26: | ||
|hgnc_mgi_id=HGNC:7785 | |hgnc_mgi_id=HGNC:7785 | ||
|nearest_ensembl=ENSG00000147862 | |nearest_ensembl=ENSG00000147862 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001369461 |
|nearest_refseq=NM_005596 | |nearest_refseq=NM_005596 | ||
|nearest_unigene=Hs.644095 | |nearest_unigene=Hs.644095 | ||
| − | |num_trans= | + | |num_trans=29 |
|species=human | |species=human | ||
|start=14314132 | |start=14314132 | ||
|start_of_center_position=14314140 | |start_of_center_position=14314140 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000380953.6 NM_001369461 NM_001369471 NM_001369464 NM_001369475 NM_001369477 NM_001190737 NM_001369481 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_99999.1 | |tss_id=hg_99999.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=O00712 |
}} | }} | ||
Revision as of 22:17, 18 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 14314140 |
|---|---|
| End of the center position in the TSS region: | 14314141 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000380953.6 NM_001369461 NM_001369471 NM_001369464 NM_001369475 NM_001369477 NM_001190737 NM_001369481 |
|---|---|
| Distance: | 0 |
| Num_trans: | 29 |
| All_trans: | ENST00000380953.6:0 NM_001369461:0 NM_001369471:0 NM_001369464:0 NM_001369475:0 NM_001369477:0 NM_001190737:0 NM_001369481:0 ENST00000397575.7:64 NM_005596:87 BX648845:87 ENST00000380959.7:148 ENST00000622520.1:170 U70862:170 ENST00000380921.3:176 LF355359:222 MA590936:222 AK299605:224 ENST00000636063.1:290 LF355360:-354 MA590937:-354 ENST00000397581.6:-371 U85193:413 ENST00000397579.6:-434 LF355358:462 MA590935:462 BC001283:464 AK290603:474 ENST00000637742.1:485 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_001369461 |
| Entrez ID: | 4781 |
| Nearest Unigene: | Hs.644095 |
| Nearest Refseq: | NM_005596 |
| Nearest Ensembl: | ENSG00000147862 |
| Gene Name: | nuclear factor I B |
| Gene Alias: | CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 |
| Gene Description: | nuclear factor I B |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
