Difference between revisions of "TSS:Mm 100054.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK185478:154 AK179531:-491 |chr=chr11 |cpg_percent=0.015 |distance=154 |distance_to_tss=6359 |end=115180959 |entrez_id=66176 |gc_percent=0.447761 |gene_...") |
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|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=154 | |distance=154 | ||
| − | |distance_to_tss= | + | |distance_to_tss=5877 |
|end=115180959 | |end=115180959 | ||
| + | |end_of_center_position=115180958 | ||
|entrez_id=66176 | |entrez_id=66176 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
|gene_alias=1110028N05Rik | |gene_alias=1110028N05Rik | ||
| − | |gene_description= | + | |gene_description=N-acetyltransferase 9 (GCN5-related, putative) |
|gene_name=Nat9 | |gene_name=Nat9 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSMUSG00000015542 | |nearest_ensembl=ENSMUSG00000015542 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001362892 |
|nearest_refseq=NM_025400 | |nearest_refseq=NM_025400 | ||
|nearest_unigene=Mm.86823 | |nearest_unigene=Mm.86823 | ||
| Line 19: | Line 20: | ||
|species=mouse | |species=mouse | ||
|start=115180955 | |start=115180955 | ||
| + | |start_of_center_position=115180957 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-7(TTTTTTAAAGAG,+,0.00) |
|transcript_name=AK185478 | |transcript_name=AK185478 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 16:07, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 115180957 |
|---|---|
| End of the center position in the TSS region: | 115180958 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK185478 |
|---|---|
| Distance: | 154 |
| Num_trans: | 2 |
| All_trans: | AK185478:154 AK179531:-491 |
TATA-Box annotation
| Distance to TSS: | 5877 |
|---|---|
| Nearest PromoterID: | NM_001362892 |
| Entrez ID: | 66176 |
| Nearest Unigene: | Mm.86823 |
| Nearest Refseq: | NM_025400 |
| Nearest Ensembl: | ENSMUSG00000015542 |
| Gene Name: | Nat9 |
| Gene Alias: | 1110028N05Rik |
| Gene Description: | N-acetyltransferase 9 (GCN5-related, putative) |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -7(TTTTTTAAAGAG,+,0.00) |
