Difference between revisions of "TSS:Mm 10007.1"
From referenceTSS
| Line 3: | Line 3: | ||
|L2dtl= | |L2dtl= | ||
|Ramp= | |Ramp= | ||
| − | |all_trans=ENSMUST00000027933.10 | + | |all_trans=ENSMUST00000027933.10:7 NM_001305233:7 NM_029766:7 ENSMUST00000195650.5:30 AK154594:30 AK166351:30 ENSMUST00000195765.5:37 AB095735:37 AB095736:37 ENSMUST00000193977.5:38 ENSMUST00000192014.1:38 AK164249:38 AK169601:38 AK133177:38 AK164999:38 AK017855:38 ENSMUST00000194064.1:40 AK012919:40 AK054412:49 AK045014:52 BC060208:77 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| Line 12: | Line 12: | ||
|entrez_id=76843 | |entrez_id=76843 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=2810047L02Rik | + | |gene_alias=2810047L02Rik{{!}}5730564G15Rik{{!}}L2dtl{{!}}Ramp |
|gene_description=denticleless E3 ubiquitin protein ligase | |gene_description=denticleless E3 ubiquitin protein ligase | ||
|gene_id=76843 | |gene_id=76843 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=MGI:1924093 | |hgnc_mgi_id=MGI:1924093 | ||
|nearest_ensembl=ENSMUSG00000037474 | |nearest_ensembl=ENSMUSG00000037474 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001305233 |
|nearest_refseq=NM_029766 | |nearest_refseq=NM_029766 | ||
|nearest_unigene=Mm.189102 | |nearest_unigene=Mm.189102 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=mouse | |species=mouse | ||
|start=191575550 | |start=191575550 | ||
|start_of_center_position=191575553 | |start_of_center_position=191575553 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000027933.10 NM_029766 | + | |transcript_name=ENSMUST00000027933.10 NM_001305233 NM_029766 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_10007.1 | |tss_id=mm_10007.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q3TLR7 | + | |uniprot_id=Q3TLR7 |
}} | }} | ||
Revision as of 16:08, 19 June 2021
Basic information about the TSS
|
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| Start of the center position in the TSS region: | 191575553 |
|---|---|
| End of the center position in the TSS region: | 191575554 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000027933.10 NM_001305233 NM_029766 |
|---|---|
| Distance: | 7 |
| Num_trans: | 21 |
| All_trans: | ENSMUST00000027933.10:7 NM_001305233:7 NM_029766:7 ENSMUST00000195650.5:30 AK154594:30 AK166351:30 ENSMUST00000195765.5:37 AB095735:37 AB095736:37 ENSMUST00000193977.5:38 ENSMUST00000192014.1:38 AK164249:38 AK169601:38 AK133177:38 AK164999:38 AK017855:38 ENSMUST00000194064.1:40 AK012919:40 AK054412:49 AK045014:52 BC060208:77 |
TATA-Box annotation
| Distance to TSS: | -10 |
|---|---|
| Nearest PromoterID: | NM_001305233 |
| Entrez ID: | 76843 |
| Nearest Unigene: | Mm.189102 |
| Nearest Refseq: | NM_029766 |
| Nearest Ensembl: | ENSMUSG00000037474 |
| Gene Name: | denticleless E3 ubiquitin protein ligase |
| Gene Alias: | 2810047L02Rik|5730564G15Rik|L2dtl|Ramp |
| Gene Description: | denticleless E3 ubiquitin protein ligase |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
