Difference between revisions of "TSS:Mm 100110.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENSMUST00000239299.1:-67 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=-67 |
|distance_to_tss=-15048 | |distance_to_tss=-15048 | ||
|end=115780786 | |end=115780786 | ||
| Line 8: | Line 9: | ||
|entrez_id=100885833 | |entrez_id=100885833 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
| − | |gene_alias=Gm22564 | + | |gene_alias=Gm22564{{!}}mir-5621{{!}}mmu-mir-5621 |
|gene_description=microRNA 5621 | |gene_description=microRNA 5621 | ||
| − | |gene_name= | + | |gene_id=71947 |
| + | |gene_name=transmembrane protein 94 | ||
| + | |gene_source=MGI:1919197 | ||
| + | |gene_symbol=Tmem94 | ||
| + | |gene_synonyms=2310067B10Rik | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=MGI:1919197 | ||
|mir-5621= | |mir-5621= | ||
|mmu-mir-5621= | |mmu-mir-5621= | ||
| Line 18: | Line 24: | ||
|nearest_refseq=NR_049194 | |nearest_refseq=NR_049194 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=1 |
|species=mouse | |species=mouse | ||
|start=115780765 | |start=115780765 | ||
|start_of_center_position=115780775 | |start_of_center_position=115780775 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENSMUST00000239299.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_100110.1 | |tss_id=mm_100110.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:09, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 115780775 |
|---|---|
| End of the center position in the TSS region: | 115780776 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000239299.1 |
|---|---|
| Distance: | -67 |
| Num_trans: | 1 |
| All_trans: | ENSMUST00000239299.1:-67 |
TATA-Box annotation
| Distance to TSS: | -15048 |
|---|---|
| Nearest PromoterID: | NR_049194 |
| Entrez ID: | 100885833 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_049194 |
| Nearest Ensembl: | ENSMUSG00000093539 |
| Gene Name: | transmembrane protein 94 |
| Gene Alias: | Gm22564|mir-5621|mmu-mir-5621 |
| Gene Description: | microRNA 5621 |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
