Difference between revisions of "TSS:Mm 100111.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=BC117762:431 BC126953:431 ENSMUST00000021134.9:445 ENSMUST00000106481.8:445 NM_029557:460 ENSMUST00000129765.7:467 AK002758:476 ENSMUST00000141748.7:492 AK089005:494 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_029557 | |nearest_refseq=NM_029557 | ||
|nearest_unigene=Mm.275438 | |nearest_unigene=Mm.275438 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=115814276 | |start=115814276 | ||
|start_of_center_position=115814277 | |start_of_center_position=115814277 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=BC117762 BC126953 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100111.1 | |tss_id=mm_100111.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q08ED2 | + | |uniprot_id=Q08ED2 |
}} | }} | ||
Revision as of 16:09, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 115814277 |
|---|---|
| End of the center position in the TSS region: | 115814278 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC117762 BC126953 |
|---|---|
| Distance: | 431 |
| Num_trans: | 9 |
| All_trans: | BC117762:431 BC126953:431 ENSMUST00000021134.9:445 ENSMUST00000106481.8:445 NM_029557:460 ENSMUST00000129765.7:467 AK002758:476 ENSMUST00000141748.7:492 AK089005:494 |
TATA-Box annotation
| Distance to TSS: | -461 |
|---|---|
| Nearest PromoterID: | NM_029557 |
| Entrez ID: | 76265 |
| Nearest Unigene: | Mm.275438 |
| Nearest Refseq: | NM_029557 |
| Nearest Ensembl: | ENSMUSG00000020781 |
| Gene Name: | tRNA splicing endonuclease subunit 54 |
| Gene Alias: | 0610034P02Rik |
| Gene Description: | tRNA splicing endonuclease subunit 54 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
