Difference between revisions of "TSS:Mm 100123.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000142089.1:0 NM_183259 | + | |all_trans=ENSMUST00000142089.1:0 NM_183259:0 AK020450:0 ENSMUST00000131566.1:12 AK004370:16 BC065414:118 LF231418:-142 MA466995:-142 ENSMUST00000152171.7:-160 BC032884:-160 LF198986:-161 MA434563:-161 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_183259 | |nearest_refseq=NM_183259 | ||
|nearest_unigene=Mm.275740 | |nearest_unigene=Mm.275740 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=115900125 | |start=115900125 | ||
|start_of_center_position=115900157 | |start_of_center_position=115900157 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000142089.1 NM_183259 | + | |transcript_name=ENSMUST00000142089.1 NM_183259 AK020450 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100123.1 | |tss_id=mm_100123.1 | ||
Revision as of 16:09, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 115900157 |
|---|---|
| End of the center position in the TSS region: | 115900158 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000142089.1 NM_183259 AK020450 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENSMUST00000142089.1:0 NM_183259:0 AK020450:0 ENSMUST00000131566.1:12 AK004370:16 BC065414:118 LF231418:-142 MA466995:-142 ENSMUST00000152171.7:-160 BC032884:-160 LF198986:-161 MA434563:-161 |
TATA-Box annotation
| Distance to TSS: | 19 |
|---|---|
| Nearest PromoterID: | NM_183259 |
| Entrez ID: | 66528 |
| Nearest Unigene: | Mm.275740 |
| Nearest Refseq: | NM_183259 |
| Nearest Ensembl: | ENSMUSG00000048442 |
| Gene Name: | small integral membrane protein 5 |
| Gene Alias: | 2210020M01Rik |
| Gene Description: | small integral membrane protein 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
