Difference between revisions of "TSS:Mm 100138.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK144947:-3 AK142648:-29 ENSMUST00000106460.8:-86 ENSMUST00000151691.7:-222 AK048888:-222 ENSMUST00000169928.7:-340 ENSMUST00000106461.7:-340 NM_133663:-340 NM_001005608 | + | |C230078O20= |
| + | |CD104= | ||
| + | |all_trans=AK144947:-3 AK142648:-29 ENSMUST00000106460.8:-86 ENSMUST00000151691.7:-222 AK048888:-222 ENSMUST00000169928.7:-340 ENSMUST00000106461.7:-340 NM_133663:-340 NM_001005608:-340 AK147424:-340 ENSMUST00000021107.13:-356 L04678:-356 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=351 | |distance_to_tss=351 | ||
|end=115975088 | |end=115975088 | ||
| + | |end_of_center_position=115975077 | ||
|entrez_id=192897 | |entrez_id=192897 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=AA407042 | + | |gene_alias=AA407042{{!}}C230078O20{{!}}CD104 |
|gene_description=integrin beta 4 | |gene_description=integrin beta 4 | ||
|gene_name=Itgb4 | |gene_name=Itgb4 | ||
| Line 16: | Line 19: | ||
|nearest_refseq=NM_133663 | |nearest_refseq=NM_133663 | ||
|nearest_unigene=Mm.213873 | |nearest_unigene=Mm.213873 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=115975064 | |start=115975064 | ||
| + | |start_of_center_position=115975076 | ||
|strand=+ | |strand=+ | ||
|transcript_name=AK144947 | |transcript_name=AK144947 | ||
Latest revision as of 16:09, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 115975076 |
|---|---|
| End of the center position in the TSS region: | 115975077 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK144947 |
|---|---|
| Distance: | -3 |
| Num_trans: | 12 |
| All_trans: | AK144947:-3 AK142648:-29 ENSMUST00000106460.8:-86 ENSMUST00000151691.7:-222 AK048888:-222 ENSMUST00000169928.7:-340 ENSMUST00000106461.7:-340 NM_133663:-340 NM_001005608:-340 AK147424:-340 ENSMUST00000021107.13:-356 L04678:-356 |
TATA-Box annotation
| Distance to TSS: | 351 |
|---|---|
| Nearest PromoterID: | NM_133663 |
| Entrez ID: | 192897 |
| Nearest Unigene: | Mm.213873 |
| Nearest Refseq: | NM_133663 |
| Nearest Ensembl: | ENSMUSG00000020758 |
| Gene Name: | Itgb4 |
| Gene Alias: | AA407042|C230078O20|CD104 |
| Gene Description: | integrin beta 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
