Difference between revisions of "TSS:Mm 100145.1"
From referenceTSS
| Line 2: | Line 2: | ||
|C230078O20= | |C230078O20= | ||
|CD104= | |CD104= | ||
| − | |all_trans=AK144111:-116 ENSMUST00000130286.1:-172 | + | |all_trans=AK144111:-116 ENSMUST00000130286.1:-172 AK145317:-201 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=-116 | |distance=-116 | ||
| − | |distance_to_tss= | + | |distance_to_tss=607 |
|end=115993112 | |end=115993112 | ||
|end_of_center_position=115993108 | |end_of_center_position=115993108 | ||
| − | |entrez_id= | + | |entrez_id=100038636 |
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=RIKEN cDNA B230344G16 gene |
|gene_id=192897 | |gene_id=192897 | ||
|gene_name=integrin beta 4 | |gene_name=integrin beta 4 | ||
| Line 18: | Line 18: | ||
|gene_symbol=Itgb4 | |gene_symbol=Itgb4 | ||
|gene_synonyms=CD104 | |gene_synonyms=CD104 | ||
| − | |gene_type= | + | |gene_type=ncRNA |
|hgnc_mgi_id=MGI:96613 | |hgnc_mgi_id=MGI:96613 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl= |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_152190 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_152190 |
| − | |nearest_unigene=Mm. | + | |nearest_unigene=Mm.450138 |
| − | |num_trans= | + | |num_trans=3 |
|species=mouse | |species=mouse | ||
|start=115993103 | |start=115993103 | ||
Revision as of 16:10, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 115993107 |
|---|---|
| End of the center position in the TSS region: | 115993108 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK144111 |
|---|---|
| Distance: | -116 |
| Num_trans: | 3 |
| All_trans: | AK144111:-116 ENSMUST00000130286.1:-172 AK145317:-201 |
TATA-Box annotation
| Distance to TSS: | 607 |
|---|---|
| Nearest PromoterID: | NR_152190 |
| Entrez ID: | 100038636 |
| Nearest Unigene: | Mm.450138 |
| Nearest Refseq: | NR_152190 |
| Nearest Ensembl: | |
| Gene Name: | integrin beta 4 |
| Gene Alias: | - |
| Gene Description: | RIKEN cDNA B230344G16 gene |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
