Difference between revisions of "TSS:Mm 100168.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Sk1= | |Sk1= | ||
|Spk1= | |Spk1= | ||
| − | |all_trans=ENSMUST00000100201.9:37 NM_001172475 | + | |all_trans=NM_001372486:-7 ENSMUST00000100201.9:37 NM_001172475:37 AF068748:37 ENSMUST00000106387.8:-100 AK216506:263 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| − | |distance= | + | |distance=-7 |
|distance_to_tss=-52 | |distance_to_tss=-52 | ||
|end=116531874 | |end=116531874 | ||
| Line 11: | Line 11: | ||
|entrez_id=20698 | |entrez_id=20698 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| − | |gene_alias=1110006G24Rik | + | |gene_alias=1110006G24Rik{{!}}Sk1{{!}}Spk1 |
|gene_description=sphingosine kinase 1 | |gene_description=sphingosine kinase 1 | ||
|gene_id=20698 | |gene_id=20698 | ||
| Line 29: | Line 29: | ||
|start_of_center_position=116531858 | |start_of_center_position=116531858 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001372486 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100168.1 | |tss_id=mm_100168.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:10, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 116531858 |
|---|---|
| End of the center position in the TSS region: | 116531859 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001372486 |
|---|---|
| Distance: | -7 |
| Num_trans: | 6 |
| All_trans: | NM_001372486:-7 ENSMUST00000100201.9:37 NM_001172475:37 AF068748:37 ENSMUST00000106387.8:-100 AK216506:263 |
TATA-Box annotation
| Distance to TSS: | -52 |
|---|---|
| Nearest PromoterID: | NM_001172475 |
| Entrez ID: | 20698 |
| Nearest Unigene: | Mm.20944 |
| Nearest Refseq: | NM_011451 |
| Nearest Ensembl: | ENSMUSG00000061878 |
| Gene Name: | sphingosine kinase 1 |
| Gene Alias: | 1110006G24Rik|Sk1|Spk1 |
| Gene Description: | sphingosine kinase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
