Difference between revisions of "TSS:Mm 100172.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Sk1= | |Sk1= | ||
|Spk1= | |Spk1= | ||
| − | |all_trans=ENSMUST00000106386.7:0 ENSMUST00000134834.7:0 ENSMUST00000145737.7:0 ENSMUST00000155102.7:0 ENSMUST00000063446.12:0 NM_001172473:0 | + | |all_trans=ENSMUST00000106386.7:0 ENSMUST00000134834.7:0 ENSMUST00000145737.7:0 ENSMUST00000155102.7:0 ENSMUST00000063446.12:0 NM_001172473:0 NM_001372488:0 NM_001372489:0 NM_025367:0 NM_001172472:0 NM_001372487:0 AK028667:0 AK160900:0 AK155332:0 AK216506:-305 ENSMUST00000063396.9:447 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| Line 11: | Line 11: | ||
|entrez_id=20698 | |entrez_id=20698 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias=1110006G24Rik | + | |gene_alias=1110006G24Rik{{!}}Sk1{{!}}Spk1 |
|gene_description=sphingosine kinase 1 | |gene_description=sphingosine kinase 1 | ||
|gene_id=20698 | |gene_id=20698 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:1316649 | |hgnc_mgi_id=MGI:1316649 | ||
|nearest_ensembl=ENSMUSG00000061878 | |nearest_ensembl=ENSMUSG00000061878 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001172472 |
|nearest_refseq=NM_011451 | |nearest_refseq=NM_011451 | ||
|nearest_unigene=Mm.20944 | |nearest_unigene=Mm.20944 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=mouse | |species=mouse | ||
|start=116532441 | |start=116532441 | ||
|start_of_center_position=116532459 | |start_of_center_position=116532459 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000106386.7 ENSMUST00000134834.7 ENSMUST00000145737.7 ENSMUST00000155102.7 ENSMUST00000063446.12 NM_001172473 NM_001172472 | + | |transcript_name=ENSMUST00000106386.7 ENSMUST00000134834.7 ENSMUST00000145737.7 ENSMUST00000155102.7 ENSMUST00000063446.12 NM_001172473 NM_001372488 NM_001372489 NM_025367 NM_001172472 NM_001372487 AK028667 AK160900 AK155332 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100172.1 | |tss_id=mm_100172.1 | ||
Revision as of 16:10, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 116532459 |
|---|---|
| End of the center position in the TSS region: | 116532460 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000106386.7 ENSMUST00000134834.7 ENSMUST00000145737.7 ENSMUST00000155102.7 ENSMUST00000063446.12 NM_001172473 NM_001372488 NM_001372489 NM_025367 NM_001172472 NM_001372487 AK028667 AK160900 AK155332 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | ENSMUST00000106386.7:0 ENSMUST00000134834.7:0 ENSMUST00000145737.7:0 ENSMUST00000155102.7:0 ENSMUST00000063446.12:0 NM_001172473:0 NM_001372488:0 NM_001372489:0 NM_025367:0 NM_001172472:0 NM_001372487:0 AK028667:0 AK160900:0 AK155332:0 AK216506:-305 ENSMUST00000063396.9:447 |
TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_001172472 |
| Entrez ID: | 20698 |
| Nearest Unigene: | Mm.20944 |
| Nearest Refseq: | NM_011451 |
| Nearest Ensembl: | ENSMUSG00000061878 |
| Gene Name: | sphingosine kinase 1 |
| Gene Alias: | 1110006G24Rik|Sk1|Spk1 |
| Gene Description: | sphingosine kinase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
