Difference between revisions of "TSS:Mm 100173.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Sk1= | |Sk1= | ||
|Spk1= | |Spk1= | ||
| − | |all_trans=ENSMUST00000063446.12:-78 AK155332:-91 ENSMUST00000155102.7:-94 AK160900:-96 ENSMUST00000145737.7:-97 ENSMUST00000134834.7:-100 | + | |all_trans=ENSMUST00000063446.12:-78 AK155332:-91 ENSMUST00000155102.7:-94 AK160900:-96 ENSMUST00000145737.7:-97 ENSMUST00000134834.7:-100 NM_001372488:-100 NM_001372489:-100 NM_025367:-100 NM_001172472:-100 NM_001372487:-100 AK028667:-100 ENSMUST00000106386.7:-107 NM_001172473:-107 ENSMUST00000063396.9:364 AK216506:-414 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| Line 11: | Line 11: | ||
|entrez_id=20698 | |entrez_id=20698 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
| − | |gene_alias=1110006G24Rik | + | |gene_alias=1110006G24Rik{{!}}Sk1{{!}}Spk1 |
|gene_description=sphingosine kinase 1 | |gene_description=sphingosine kinase 1 | ||
|gene_id=20698 | |gene_id=20698 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:1316649 | |hgnc_mgi_id=MGI:1316649 | ||
|nearest_ensembl=ENSMUSG00000061878 | |nearest_ensembl=ENSMUSG00000061878 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001172472 |
|nearest_refseq=NM_011451 | |nearest_refseq=NM_011451 | ||
|nearest_unigene=Mm.20944 | |nearest_unigene=Mm.20944 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=mouse | |species=mouse | ||
|start=116532550 | |start=116532550 | ||
Revision as of 16:10, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 116532555 |
|---|---|
| End of the center position in the TSS region: | 116532556 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000063446.12 |
|---|---|
| Distance: | -78 |
| Num_trans: | 16 |
| All_trans: | ENSMUST00000063446.12:-78 AK155332:-91 ENSMUST00000155102.7:-94 AK160900:-96 ENSMUST00000145737.7:-97 ENSMUST00000134834.7:-100 NM_001372488:-100 NM_001372489:-100 NM_025367:-100 NM_001172472:-100 NM_001372487:-100 AK028667:-100 ENSMUST00000106386.7:-107 NM_001172473:-107 ENSMUST00000063396.9:364 AK216506:-414 |
TATA-Box annotation
| Distance to TSS: | 112 |
|---|---|
| Nearest PromoterID: | NM_001172472 |
| Entrez ID: | 20698 |
| Nearest Unigene: | Mm.20944 |
| Nearest Refseq: | NM_011451 |
| Nearest Ensembl: | ENSMUSG00000061878 |
| Gene Name: | sphingosine kinase 1 |
| Gene Alias: | 1110006G24Rik|Sk1|Spk1 |
| Gene Description: | sphingosine kinase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
