Difference between revisions of "TSS:Mm 100175.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Sk1= | |Sk1= | ||
|Spk1= | |Spk1= | ||
| − | |all_trans=ENSMUST00000154034.7:-18 ENSMUST00000150658.1:-35 | + | |all_trans=ENSMUST00000154034.7:-18 ENSMUST00000150658.1:-35 ENSMUST00000124682.7:272 ENSMUST00000063396.9:-361 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| Line 11: | Line 11: | ||
|entrez_id=20698 | |entrez_id=20698 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=1110006G24Rik | + | |gene_alias=1110006G24Rik{{!}}Sk1{{!}}Spk1 |
|gene_description=sphingosine kinase 1 | |gene_description=sphingosine kinase 1 | ||
|gene_id=20698 | |gene_id=20698 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_011451 | |nearest_refseq=NM_011451 | ||
|nearest_unigene=Mm.20944 | |nearest_unigene=Mm.20944 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=mouse | |species=mouse | ||
|start=116533285 | |start=116533285 | ||
Revision as of 16:10, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 116533294 |
|---|---|
| End of the center position in the TSS region: | 116533295 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000154034.7 |
|---|---|
| Distance: | -18 |
| Num_trans: | 4 |
| All_trans: | ENSMUST00000154034.7:-18 ENSMUST00000150658.1:-35 ENSMUST00000124682.7:272 ENSMUST00000063396.9:-361 |
TATA-Box annotation
| Distance to TSS: | 56 |
|---|---|
| Nearest PromoterID: | NM_025367 |
| Entrez ID: | 20698 |
| Nearest Unigene: | Mm.20944 |
| Nearest Refseq: | NM_011451 |
| Nearest Ensembl: | ENSMUSG00000061878 |
| Gene Name: | sphingosine kinase 1 |
| Gene Alias: | 1110006G24Rik|Sk1|Spk1 |
| Gene Description: | sphingosine kinase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
