Difference between revisions of "TSS:Mm 10018.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000195526.1:-414 | + | |all_trans=LF220808:-148 MA456385:-148 ENSMUST00000195526.1:-414 LF193103:-492 MA428680:-492 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance=- | + | |distance=-148 |
|distance_to_tss=18574 | |distance_to_tss=18574 | ||
|end=192074036 | |end=192074036 | ||
| + | |end_of_center_position=192074025 | ||
|entrez_id=22033 | |entrez_id=22033 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
| Line 11: | Line 12: | ||
|gene_description=TNF receptor-associated factor 5 | |gene_description=TNF receptor-associated factor 5 | ||
|gene_id= | |gene_id= | ||
| − | |gene_name= | + | |gene_name=Traf5 |
|gene_source=MGI:3782108 | |gene_source=MGI:3782108 | ||
|gene_symbol=Gm3934 | |gene_symbol=Gm3934 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_011633 | |nearest_refseq=NM_011633 | ||
|nearest_unigene=Mm.380491 | |nearest_unigene=Mm.380491 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=192074013 | |start=192074013 | ||
| + | |start_of_center_position=192074024 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF220808 MA456385 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_10018.1 | |tss_id=mm_10018.1 | ||
Latest revision as of 16:10, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 192074024 |
|---|---|
| End of the center position in the TSS region: | 192074025 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF220808 MA456385 |
|---|---|
| Distance: | -148 |
| Num_trans: | 5 |
| All_trans: | LF220808:-148 MA456385:-148 ENSMUST00000195526.1:-414 LF193103:-492 MA428680:-492 |
TATA-Box annotation
| Distance to TSS: | 18574 |
|---|---|
| Nearest PromoterID: | NM_011633 |
| Entrez ID: | 22033 |
| Nearest Unigene: | Mm.380491 |
| Nearest Refseq: | NM_011633 |
| Nearest Ensembl: | |
| Gene Name: | Traf5 |
| Gene Alias: | - |
| Gene Description: | TNF receptor-associated factor 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
