Difference between revisions of "TSS:Mm 100208.1"
From referenceTSS
| Line 5: | Line 5: | ||
|Sfrs10= | |Sfrs10= | ||
|Sfrs2= | |Sfrs2= | ||
| − | |all_trans=ENSMUST00000125920 | + | |all_trans=ENSMUST00000125920.1:23 AK080006:23 ENSMUST00000135135.1:202 ENSMUST00000136012.7:490 NM_001361585:490 BC100547:490 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| Line 14: | Line 14: | ||
|entrez_id=20382 | |entrez_id=20382 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=D11Wsu175e | + | |gene_alias=D11Wsu175e{{!}}MRF-1{{!}}Pr264{{!}}SC35{{!}}Sfrs10{{!}}Sfrs2 |
|gene_description=serine/arginine-rich splicing factor 2 | |gene_description=serine/arginine-rich splicing factor 2 | ||
|gene_id=69900 | |gene_id=69900 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_011358 | |nearest_refseq=NM_011358 | ||
|nearest_unigene=Mm.21841 | |nearest_unigene=Mm.21841 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=mouse | |species=mouse | ||
|start=116853254 | |start=116853254 | ||
|start_of_center_position=116853263 | |start_of_center_position=116853263 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000125920 | + | |transcript_name=ENSMUST00000125920.1 AK080006 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100208.1 | |tss_id=mm_100208.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:11, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 116853263 |
|---|---|
| End of the center position in the TSS region: | 116853264 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000125920.1 AK080006 |
|---|---|
| Distance: | 23 |
| Num_trans: | 6 |
| All_trans: | ENSMUST00000125920.1:23 AK080006:23 ENSMUST00000135135.1:202 ENSMUST00000136012.7:490 NM_001361585:490 BC100547:490 |
TATA-Box annotation
| Distance to TSS: | -169 |
|---|---|
| Nearest PromoterID: | NM_011358 |
| Entrez ID: | 20382 |
| Nearest Unigene: | Mm.21841 |
| Nearest Refseq: | NM_011358 |
| Nearest Ensembl: | ENSMUSG00000034120 |
| Gene Name: | major facilitator superfamily domain containing 11 |
| Gene Alias: | D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2 |
| Gene Description: | serine/arginine-rich splicing factor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
