Difference between revisions of "TSS:Mm 10021.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000195526.1:74 | + | |all_trans=LF193103:0 MA428680:0 ENSMUST00000195526.1:74 LF220808:340 MA456385:340 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=18073 | |distance_to_tss=18073 | ||
|end=192074529 | |end=192074529 | ||
| + | |end_of_center_position=192074527 | ||
|entrez_id=22033 | |entrez_id=22033 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| Line 11: | Line 12: | ||
|gene_description=TNF receptor-associated factor 5 | |gene_description=TNF receptor-associated factor 5 | ||
|gene_id= | |gene_id= | ||
| − | |gene_name= | + | |gene_name=Traf5 |
|gene_source=MGI:3782108 | |gene_source=MGI:3782108 | ||
|gene_symbol=Gm3934 | |gene_symbol=Gm3934 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_011633 | |nearest_refseq=NM_011633 | ||
|nearest_unigene=Mm.380491 | |nearest_unigene=Mm.380491 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=192074523 | |start=192074523 | ||
| + | |start_of_center_position=192074526 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF193103 MA428680 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_10021.1 | |tss_id=mm_10021.1 | ||
Latest revision as of 16:11, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 192074526 |
|---|---|
| End of the center position in the TSS region: | 192074527 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF193103 MA428680 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | LF193103:0 MA428680:0 ENSMUST00000195526.1:74 LF220808:340 MA456385:340 |
TATA-Box annotation
| Distance to TSS: | 18073 |
|---|---|
| Nearest PromoterID: | NM_011633 |
| Entrez ID: | 22033 |
| Nearest Unigene: | Mm.380491 |
| Nearest Refseq: | NM_011633 |
| Nearest Ensembl: | |
| Gene Name: | Traf5 |
| Gene Alias: | - |
| Gene Description: | TNF receptor-associated factor 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
