Difference between revisions of "TSS:Mm 100218.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=BC037520:11 ENSMUST00000182811.1:-40 AK171830:-40 ENSMUST00000145438.1:-52 | + | |all_trans=BC037520:11 ENSMUST00000182811.1:-40 AK171830:-40 ENSMUST00000145438.1:-52 AK012687:-52 ENSMUST00000233355.1:-54 ENSMUST00000149822.2:-59 NR_027059:-59 ENSMUST00000232907.1:-227 ENSMUST00000233685.1:-378 ENSMUST00000157904.1:391 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_027059 | |nearest_refseq=NR_027059 | ||
|nearest_unigene=Mm.309167 | |nearest_unigene=Mm.309167 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=mouse | |species=mouse | ||
|start=117076841 | |start=117076841 | ||
Revision as of 16:11, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 117076846 |
|---|---|
| End of the center position in the TSS region: | 117076847 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC037520 |
|---|---|
| Distance: | 11 |
| Num_trans: | 11 |
| All_trans: | BC037520:11 ENSMUST00000182811.1:-40 AK171830:-40 ENSMUST00000145438.1:-52 AK012687:-52 ENSMUST00000233355.1:-54 ENSMUST00000149822.2:-59 NR_027059:-59 ENSMUST00000232907.1:-227 ENSMUST00000233685.1:-378 ENSMUST00000157904.1:391 |
TATA-Box annotation
| Distance to TSS: | 64 |
|---|---|
| Nearest PromoterID: | NR_027059 |
| Entrez ID: | 76972 |
| Nearest Unigene: | Mm.309167 |
| Nearest Refseq: | NR_027059 |
| Nearest Ensembl: | ENSMUSG00000086859 |
| Gene Name: | small nucleolar RNA host gene 20 |
| Gene Alias: | 2810008D09Rik |
| Gene Description: | small nucleolar RNA host gene 20 |
| Gene Type: | ncRNA |
| CpG%: | 0.095 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
