Difference between revisions of "TSS:Mm 100224.1"
From referenceTSS
| Line 2: | Line 2: | ||
|2810012L19Rik= | |2810012L19Rik= | ||
|Naa-35= | |Naa-35= | ||
| − | |all_trans=ENSMUST00000127090.7:0 ENSMUST00000021177.14 | + | |all_trans=ENSMUST00000127090.7:0 ENSMUST00000021177.14:0 NM_001166506:0 NM_001166507:0 NM_028777:0 NR_029459:0 AK047396:0 ENSMUST00000103026.9:52 ENSMUST00000090433.5:52 BC086620:52 AK004818:63 ENSMUST00000146585.1:66 BC055849:66 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-8 |
|end=117115186 | |end=117115186 | ||
|end_of_center_position=117115160 | |end_of_center_position=117115160 | ||
|entrez_id=74136 | |entrez_id=74136 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=1200017E04Rik | + | |gene_alias=1200017E04Rik{{!}}2810012L19Rik{{!}}Naa-35 |
|gene_description=SEC14-like lipid binding 1 | |gene_description=SEC14-like lipid binding 1 | ||
|gene_id=74136 | |gene_id=74136 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:1921386 | |hgnc_mgi_id=MGI:1921386 | ||
|nearest_ensembl=ENSMUSG00000020823 | |nearest_ensembl=ENSMUSG00000020823 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001166506 |
|nearest_refseq=NM_028777 | |nearest_refseq=NM_028777 | ||
|nearest_unigene=Mm.272312 | |nearest_unigene=Mm.272312 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=117115133 | |start=117115133 | ||
|start_of_center_position=117115159 | |start_of_center_position=117115159 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000127090.7 ENSMUST00000021177.14 | + | |transcript_name=ENSMUST00000127090.7 ENSMUST00000021177.14 NM_001166506 NM_001166507 NM_028777 NR_029459 AK047396 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100224.1 | |tss_id=mm_100224.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A8Y5H7 Q8BXE6 |
}} | }} | ||
Revision as of 16:12, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 117115159 |
|---|---|
| End of the center position in the TSS region: | 117115160 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000127090.7 ENSMUST00000021177.14 NM_001166506 NM_001166507 NM_028777 NR_029459 AK047396 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENSMUST00000127090.7:0 ENSMUST00000021177.14:0 NM_001166506:0 NM_001166507:0 NM_028777:0 NR_029459:0 AK047396:0 ENSMUST00000103026.9:52 ENSMUST00000090433.5:52 BC086620:52 AK004818:63 ENSMUST00000146585.1:66 BC055849:66 |
TATA-Box annotation
| Distance to TSS: | -8 |
|---|---|
| Nearest PromoterID: | NM_001166506 |
| Entrez ID: | 74136 |
| Nearest Unigene: | Mm.272312 |
| Nearest Refseq: | NM_028777 |
| Nearest Ensembl: | ENSMUSG00000020823 |
| Gene Name: | SEC14-like lipid binding 1 |
| Gene Alias: | 1200017E04Rik|2810012L19Rik|Naa-35 |
| Gene Description: | SEC14-like lipid binding 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
