Difference between revisions of "TSS:Mm 100225.1"
From referenceTSS
| Line 2: | Line 2: | ||
|2810012L19Rik= | |2810012L19Rik= | ||
|Naa-35= | |Naa-35= | ||
| − | |all_trans=ENSMUST00000103026.9:0 ENSMUST00000090433.5:0 ENSMUST00000146585.1 | + | |all_trans=ENSMUST00000103026.9:0 ENSMUST00000090433.5:0 ENSMUST00000146585.1:0 BC086620:0 AK004818:0 BC055849:0 ENSMUST00000021177.14:-24 ENSMUST00000127090.7:-28 NM_001166506:-28 NM_001166507:-28 NM_028777:-28 NR_029459:-28 AK047396:-28 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=58 |
|end=117115257 | |end=117115257 | ||
|end_of_center_position=117115227 | |end_of_center_position=117115227 | ||
|entrez_id=74136 | |entrez_id=74136 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
| − | |gene_alias=1200017E04Rik | + | |gene_alias=1200017E04Rik{{!}}2810012L19Rik{{!}}Naa-35 |
|gene_description=SEC14-like lipid binding 1 | |gene_description=SEC14-like lipid binding 1 | ||
|gene_id=74136 | |gene_id=74136 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:1921386 | |hgnc_mgi_id=MGI:1921386 | ||
|nearest_ensembl=ENSMUSG00000020823 | |nearest_ensembl=ENSMUSG00000020823 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_029459 |
|nearest_refseq=NM_028777 | |nearest_refseq=NM_028777 | ||
|nearest_unigene=Mm.272312 | |nearest_unigene=Mm.272312 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=117115195 | |start=117115195 | ||
|start_of_center_position=117115226 | |start_of_center_position=117115226 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000103026.9 ENSMUST00000090433.5 ENSMUST00000146585.1 | + | |transcript_name=ENSMUST00000103026.9 ENSMUST00000090433.5 ENSMUST00000146585.1 BC086620 AK004818 BC055849 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100225.1 | |tss_id=mm_100225.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A8Y5H7 | + | |uniprot_id=A8Y5H7 |
}} | }} | ||
Revision as of 16:12, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 117115226 |
|---|---|
| End of the center position in the TSS region: | 117115227 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000103026.9 ENSMUST00000090433.5 ENSMUST00000146585.1 BC086620 AK004818 BC055849 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENSMUST00000103026.9:0 ENSMUST00000090433.5:0 ENSMUST00000146585.1:0 BC086620:0 AK004818:0 BC055849:0 ENSMUST00000021177.14:-24 ENSMUST00000127090.7:-28 NM_001166506:-28 NM_001166507:-28 NM_028777:-28 NR_029459:-28 AK047396:-28 |
TATA-Box annotation
| Distance to TSS: | 58 |
|---|---|
| Nearest PromoterID: | NR_029459 |
| Entrez ID: | 74136 |
| Nearest Unigene: | Mm.272312 |
| Nearest Refseq: | NM_028777 |
| Nearest Ensembl: | ENSMUSG00000020823 |
| Gene Name: | SEC14-like lipid binding 1 |
| Gene Alias: | 1200017E04Rik|2810012L19Rik|Naa-35 |
| Gene Description: | SEC14-like lipid binding 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
