Difference between revisions of "TSS:Mm 100258.1"
From referenceTSS
| Line 3: | Line 3: | ||
|PNUTL4= | |PNUTL4= | ||
|Sint1= | |Sint1= | ||
| − | |all_trans=NM_001113488 | + | |all_trans=NM_001113488:29 ENSMUST00000106349.1:61 AK170048:136 ENSMUST00000155331.7:144 AK164581:144 AK031757:154 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| Line 12: | Line 12: | ||
|entrez_id=53860 | |entrez_id=53860 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=MSF1 | + | |gene_alias=MSF1{{!}}Msf{{!}}PNUTL4{{!}}Sint1 |
|gene_description=septin 9 | |gene_description=septin 9 | ||
|gene_id=53860 | |gene_id=53860 | ||
|gene_name=septin 9 | |gene_name=septin 9 | ||
|gene_source=MGI:1858222 | |gene_source=MGI:1858222 | ||
| − | |gene_symbol= | + | |gene_symbol=Septin9 |
| − | |gene_synonyms=MSF1 Msf PNUTL4 SL3-3_integration_site_1 Sint1 | + | |gene_synonyms=MSF1 Msf PNUTL4 SL3-3_integration_site_1 Sept9 Sint1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1858222 | |hgnc_mgi_id=MGI:1858222 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_017380 | |nearest_refseq=NM_017380 | ||
|nearest_unigene=Mm.38450 | |nearest_unigene=Mm.38450 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=mouse | |species=mouse | ||
|start=117332277 | |start=117332277 | ||
|start_of_center_position=117332280 | |start_of_center_position=117332280 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=NM_001113488 | + | |transcript_name=NM_001113488 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100258.1 | |tss_id=mm_100258.1 | ||
Revision as of 16:12, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 117332280 |
|---|---|
| End of the center position in the TSS region: | 117332281 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001113488 |
|---|---|
| Distance: | 29 |
| Num_trans: | 6 |
| All_trans: | NM_001113488:29 ENSMUST00000106349.1:61 AK170048:136 ENSMUST00000155331.7:144 AK164581:144 AK031757:154 |
TATA-Box annotation
| Distance to TSS: | -32 |
|---|---|
| Nearest PromoterID: | NM_001113488 |
| Entrez ID: | 53860 |
| Nearest Unigene: | Mm.38450 |
| Nearest Refseq: | NM_017380 |
| Nearest Ensembl: | ENSMUSG00000059248 |
| Gene Name: | septin 9 |
| Gene Alias: | MSF1|Msf|PNUTL4|Sint1 |
| Gene Description: | septin 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
