Difference between revisions of "TSS:Mm 10029.1"
From referenceTSS
| Line 2: | Line 2: | ||
|C730034D20Rik= | |C730034D20Rik= | ||
|E130101E15Rik= | |E130101E15Rik= | ||
| − | |all_trans=ENSMUST00000193144.1:-33 BC138938:-133 BC138939:-133 BC145469:-133 AK203210:-140 BC057141:-160 ENSMUST00000192128.5:-300 BC020065:-300 AK164939:-378 ENSMUST00000110849.9:-383 ENSMUST00000194395.5:-383 AK135612:-383 AK155440:-383 ENSMUST00000193322.1:-397 ENSMUST00000192491.5:-399 AK040839:-399 AK050287:-403 ENSMUST00000192158.5:-404 ENSMUST00000194493.1:-408 ENSMUST00000073279.12:-413 | + | |all_trans=ENSMUST00000193144.1:-33 BC138938:-133 BC138939:-133 BC145469:-133 AK203210:-140 BC057141:-160 ENSMUST00000192128.5:-300 BC020065:-300 AK164939:-378 ENSMUST00000110849.9:-383 ENSMUST00000194395.5:-383 AK135612:-383 AK155440:-383 ENSMUST00000193322.1:-397 ENSMUST00000192491.5:-399 AK040839:-399 AK050287:-403 ENSMUST00000192158.5:-404 ENSMUST00000194493.1:-408 ENSMUST00000073279.12:-413 NM_001290282:-413 NM_001346740:-413 NM_001290278:-413 NM_144814:-413 NM_001290280:-413 NM_001290279:-413 ENSMUST00000192866.5:-435 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| Line 11: | Line 11: | ||
|entrez_id=214742 | |entrez_id=214742 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=4921514E24Rik | + | |gene_alias=4921514E24Rik{{!}}C730034D20Rik{{!}}E130101E15Rik |
|gene_description=REST corepressor 3 | |gene_description=REST corepressor 3 | ||
|gene_id=214742 | |gene_id=214742 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:2441920 | |hgnc_mgi_id=MGI:2441920 | ||
|nearest_ensembl=ENSMUSG00000037395 | |nearest_ensembl=ENSMUSG00000037395 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001290280 |
|nearest_refseq=NM_144814 | |nearest_refseq=NM_144814 | ||
|nearest_unigene=Mm.207457 | |nearest_unigene=Mm.207457 | ||
| − | |num_trans= | + | |num_trans=27 |
|species=mouse | |species=mouse | ||
|start=192137576 | |start=192137576 | ||
Revision as of 16:13, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 192137601 |
|---|---|
| End of the center position in the TSS region: | 192137602 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000193144.1 |
|---|---|
| Distance: | -33 |
| Num_trans: | 27 |
| All_trans: | ENSMUST00000193144.1:-33 BC138938:-133 BC138939:-133 BC145469:-133 AK203210:-140 BC057141:-160 ENSMUST00000192128.5:-300 BC020065:-300 AK164939:-378 ENSMUST00000110849.9:-383 ENSMUST00000194395.5:-383 AK135612:-383 AK155440:-383 ENSMUST00000193322.1:-397 ENSMUST00000192491.5:-399 AK040839:-399 AK050287:-403 ENSMUST00000192158.5:-404 ENSMUST00000194493.1:-408 ENSMUST00000073279.12:-413 NM_001290282:-413 NM_001346740:-413 NM_001290278:-413 NM_144814:-413 NM_001290280:-413 NM_001290279:-413 ENSMUST00000192866.5:-435 |
TATA-Box annotation
| Distance to TSS: | 438 |
|---|---|
| Nearest PromoterID: | NM_001290280 |
| Entrez ID: | 214742 |
| Nearest Unigene: | Mm.207457 |
| Nearest Refseq: | NM_144814 |
| Nearest Ensembl: | ENSMUSG00000037395 |
| Gene Name: | REST corepressor 3 |
| Gene Alias: | 4921514E24Rik|C730034D20Rik|E130101E15Rik |
| Gene Description: | REST corepressor 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
