Difference between revisions of "TSS:Mm 100314.1"
From referenceTSS
| Line 2: | Line 2: | ||
|4933424M23Rik= | |4933424M23Rik= | ||
|SAF= | |SAF= | ||
| − | |all_trans=AK153001:-4 ENSMUST00000017859.9:-16 AK163967:-16 AK053905:-29 AK046174:-35 | + | |all_trans=AK153001:-4 ENSMUST00000017859.9:-16 AK163967:-16 AK053905:-29 AK046174:-35 NR_151726:-44 NM_133757:-44 AK049359:-44 BC151089:-144 BC151185:-144 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| Line 11: | Line 11: | ||
|entrez_id=74451 | |entrez_id=74451 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
| − | |gene_alias=2610019F11Rik | + | |gene_alias=2610019F11Rik{{!}}4933424M23Rik{{!}}SAF |
|gene_description=phosphatidylglycerophosphate synthase 1 | |gene_description=phosphatidylglycerophosphate synthase 1 | ||
|gene_id=74451 | |gene_id=74451 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:1921701 | |hgnc_mgi_id=MGI:1921701 | ||
|nearest_ensembl=ENSMUSG00000017715 | |nearest_ensembl=ENSMUSG00000017715 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_151726 |
|nearest_refseq=NM_133757 | |nearest_refseq=NM_133757 | ||
|nearest_unigene=Mm.28864 | |nearest_unigene=Mm.28864 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=mouse | |species=mouse | ||
|start=117986900 | |start=117986900 | ||
Revision as of 16:14, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 117986908 |
|---|---|
| End of the center position in the TSS region: | 117986909 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK153001 |
|---|---|
| Distance: | -4 |
| Num_trans: | 10 |
| All_trans: | AK153001:-4 ENSMUST00000017859.9:-16 AK163967:-16 AK053905:-29 AK046174:-35 NR_151726:-44 NM_133757:-44 AK049359:-44 BC151089:-144 BC151185:-144 |
TATA-Box annotation
| Distance to TSS: | 51 |
|---|---|
| Nearest PromoterID: | NR_151726 |
| Entrez ID: | 74451 |
| Nearest Unigene: | Mm.28864 |
| Nearest Refseq: | NM_133757 |
| Nearest Ensembl: | ENSMUSG00000017715 |
| Gene Name: | phosphatidylglycerophosphate synthase 1 |
| Gene Alias: | 2610019F11Rik|4933424M23Rik|SAF |
| Gene Description: | phosphatidylglycerophosphate synthase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
