Difference between revisions of "TSS:Mm 100316.1"
From referenceTSS
| Line 4: | Line 4: | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=566 | |distance_to_tss=566 | ||
|end=117987429 | |end=117987429 | ||
| Line 10: | Line 10: | ||
|entrez_id=74451 | |entrez_id=74451 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
| − | |gene_alias=2610019F11Rik | + | |gene_alias=2610019F11Rik{{!}}4933424M23Rik{{!}}SAF |
|gene_description=phosphatidylglycerophosphate synthase 1 | |gene_description=phosphatidylglycerophosphate synthase 1 | ||
|gene_name=Pgs1 | |gene_name=Pgs1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSMUSG00000017715 | |nearest_ensembl=ENSMUSG00000017715 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_151726 |
|nearest_refseq=NM_133757 | |nearest_refseq=NM_133757 | ||
|nearest_unigene=Mm.28864 | |nearest_unigene=Mm.28864 | ||
| Line 23: | Line 23: | ||
|start_of_center_position=117987422 | |start_of_center_position=117987422 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=16(GTCCTTTAAAGG,-,0.00),17(TCCTTTAAAGGA,+,0.00),17(TCCTTTAAAGGA,-,0.00),18(CCTTTAAAGGAA,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:14, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 117987422 |
|---|---|
| End of the center position in the TSS region: | 117987423 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 566 |
|---|---|
| Nearest PromoterID: | NR_151726 |
| Entrez ID: | 74451 |
| Nearest Unigene: | Mm.28864 |
| Nearest Refseq: | NM_133757 |
| Nearest Ensembl: | ENSMUSG00000017715 |
| Gene Name: | Pgs1 |
| Gene Alias: | 2610019F11Rik|4933424M23Rik|SAF |
| Gene Description: | phosphatidylglycerophosphate synthase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 16(GTCCTTTAAAGG,-,0.00),17(TCCTTTAAAGGA,+,0.00),17(TCCTTTAAAGGA,-,0.00),18(CCTTTAAAGGAA,+,0.00) |
