Difference between revisions of "TSS:Mm 10032.1"
From referenceTSS
| Line 2: | Line 2: | ||
|C730034D20Rik= | |C730034D20Rik= | ||
|E130101E15Rik= | |E130101E15Rik= | ||
| − | |all_trans=ENSMUST00000110849.9:0 ENSMUST00000073279.12:0 ENSMUST00000192158.5:0 ENSMUST00000192491.5:0 ENSMUST00000194493.1:0 ENSMUST00000194395.5:0 ENSMUST00000193322.1:0 | + | |all_trans=ENSMUST00000110849.9:0 ENSMUST00000073279.12:0 ENSMUST00000192158.5:0 ENSMUST00000192491.5:0 ENSMUST00000194493.1:0 ENSMUST00000194395.5:0 ENSMUST00000193322.1:0 NM_001290282:0 NM_001346740:0 NM_001290278:0 NM_144814:0 NM_001290280:0 NM_001290279:0 AK135612:0 AK155440:0 AK050287:0 AK040839:0 AK164939:0 ENSMUST00000192866.5:-15 ENSMUST00000192128.5:72 BC020065:72 BC057141:212 AK203210:232 BC138938:239 BC138939:239 BC145469:239 ENSMUST00000193144.1:339 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| Line 11: | Line 11: | ||
|entrez_id=214742 | |entrez_id=214742 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
| − | |gene_alias=4921514E24Rik | + | |gene_alias=4921514E24Rik{{!}}C730034D20Rik{{!}}E130101E15Rik |
|gene_description=REST corepressor 3 | |gene_description=REST corepressor 3 | ||
|gene_id=214742 | |gene_id=214742 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:2441920 | |hgnc_mgi_id=MGI:2441920 | ||
|nearest_ensembl=ENSMUSG00000037395 | |nearest_ensembl=ENSMUSG00000037395 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001290280 |
|nearest_refseq=NM_144814 | |nearest_refseq=NM_144814 | ||
|nearest_unigene=Mm.207457 | |nearest_unigene=Mm.207457 | ||
| − | |num_trans= | + | |num_trans=27 |
|species=mouse | |species=mouse | ||
|start=192137998 | |start=192137998 | ||
|start_of_center_position=192138022 | |start_of_center_position=192138022 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000110849.9 ENSMUST00000073279.12 ENSMUST00000192158.5 ENSMUST00000192491.5 ENSMUST00000194493.1 ENSMUST00000194395.5 ENSMUST00000193322.1 | + | |transcript_name=ENSMUST00000110849.9 ENSMUST00000073279.12 ENSMUST00000192158.5 ENSMUST00000192491.5 ENSMUST00000194493.1 ENSMUST00000194395.5 ENSMUST00000193322.1 NM_001290282 NM_001346740 NM_001290278 NM_144814 NM_001290280 NM_001290279 AK135612 AK155440 AK050287 AK040839 AK164939 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_10032.1 | |tss_id=mm_10032.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A0A6YWP7 A0A0A6YWY4 A0A0A6YX54 Q6PGA0 | + | |uniprot_id=A0A0A6YWP7 A0A0A6YWY4 A0A0A6YX54 A0A0A6YXM5 Q6PGA0 |
}} | }} | ||
Revision as of 16:14, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 192138022 |
|---|---|
| End of the center position in the TSS region: | 192138023 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000110849.9 ENSMUST00000073279.12 ENSMUST00000192158.5 ENSMUST00000192491.5 ENSMUST00000194493.1 ENSMUST00000194395.5 ENSMUST00000193322.1 NM_001290282 NM_001346740 NM_001290278 NM_144814 NM_001290280 NM_001290279 AK135612 AK155440 AK050287 AK040839 AK164939 |
|---|---|
| Distance: | 0 |
| Num_trans: | 27 |
| All_trans: | ENSMUST00000110849.9:0 ENSMUST00000073279.12:0 ENSMUST00000192158.5:0 ENSMUST00000192491.5:0 ENSMUST00000194493.1:0 ENSMUST00000194395.5:0 ENSMUST00000193322.1:0 NM_001290282:0 NM_001346740:0 NM_001290278:0 NM_144814:0 NM_001290280:0 NM_001290279:0 AK135612:0 AK155440:0 AK050287:0 AK040839:0 AK164939:0 ENSMUST00000192866.5:-15 ENSMUST00000192128.5:72 BC020065:72 BC057141:212 AK203210:232 BC138938:239 BC138939:239 BC145469:239 ENSMUST00000193144.1:339 |
TATA-Box annotation
| Distance to TSS: | 17 |
|---|---|
| Nearest PromoterID: | NM_001290280 |
| Entrez ID: | 214742 |
| Nearest Unigene: | Mm.207457 |
| Nearest Refseq: | NM_144814 |
| Nearest Ensembl: | ENSMUSG00000037395 |
| Gene Name: | REST corepressor 3 |
| Gene Alias: | 4921514E24Rik|C730034D20Rik|E130101E15Rik |
| Gene Description: | REST corepressor 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
