Difference between revisions of "TSS:Mm 100338.1"
From referenceTSS
| Line 4: | Line 4: | ||
|Ppicap= | |Ppicap= | ||
|Tango10b= | |Tango10b= | ||
| + | |all_trans=LF231548:-37 MA467125:-37 LF231552:120 MA467129:120 LF231553:222 MA467130:222 LF231546:-263 MA467123:-263 LF231555:341 MA467132:341 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=-37 |
| − | |distance_to_tss= | + | |distance_to_tss=8656 |
|end=118393349 | |end=118393349 | ||
|end_of_center_position=118393304 | |end_of_center_position=118393304 | ||
|entrez_id=19039 | |entrez_id=19039 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| − | |gene_alias=90K | + | |gene_alias=90K{{!}}CyCAP{{!}}MAC-2BP{{!}}Ppicap{{!}}Tango10b |
| − | |gene_description= | + | |gene_description=lectin, galactoside-binding, soluble, 3 binding protein |
|gene_name=Lgals3bp | |gene_name=Lgals3bp | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 20: | Line 21: | ||
|nearest_refseq=NM_011150 | |nearest_refseq=NM_011150 | ||
|nearest_unigene=Mm.3152 | |nearest_unigene=Mm.3152 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=mouse | |species=mouse | ||
|start=118393257 | |start=118393257 | ||
|start_of_center_position=118393303 | |start_of_center_position=118393303 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF231548 MA467125 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_100338.1 | |tss_id=mm_100338.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Revision as of 16:14, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 118393303 |
|---|---|
| End of the center position in the TSS region: | 118393304 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF231548 MA467125 |
|---|---|
| Distance: | -37 |
| Num_trans: | 10 |
| All_trans: | LF231548:-37 MA467125:-37 LF231552:120 MA467129:120 LF231553:222 MA467130:222 LF231546:-263 MA467123:-263 LF231555:341 MA467132:341 |
TATA-Box annotation
| Distance to TSS: | 8656 |
|---|---|
| Nearest PromoterID: | NM_011150 |
| Entrez ID: | 19039 |
| Nearest Unigene: | Mm.3152 |
| Nearest Refseq: | NM_011150 |
| Nearest Ensembl: | ENSMUSG00000033880 |
| Gene Name: | Lgals3bp |
| Gene Alias: | 90K|CyCAP|MAC-2BP|Ppicap|Tango10b |
| Gene Description: | lectin, galactoside-binding, soluble, 3 binding protein |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
