Difference between revisions of "TSS:Mm 100374.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000053440.7:0 AK054172:0 | + | |all_trans=ENSMUST00000053440.7:0 AK054172:0 BC085159:-488 ENSMUST00000236813.1:-495 BC072591:-495 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:2443893 | |hgnc_mgi_id=MGI:2443893 | ||
|nearest_ensembl=ENSMUSG00000039963 | |nearest_ensembl=ENSMUSG00000039963 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001364767 |
|nearest_refseq=NM_175430 | |nearest_refseq=NM_175430 | ||
|nearest_unigene=Mm.189885 | |nearest_unigene=Mm.189885 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=119229092 | |start=119229092 | ||
Revision as of 16:15, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 119229111 |
|---|---|
| End of the center position in the TSS region: | 119229112 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000053440.7 AK054172 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | ENSMUST00000053440.7:0 AK054172:0 BC085159:-488 ENSMUST00000236813.1:-495 BC072591:-495 |
TATA-Box annotation
| Distance to TSS: | 540 |
|---|---|
| Nearest PromoterID: | NM_001364767 |
| Entrez ID: | 207607 |
| Nearest Unigene: | Mm.189885 |
| Nearest Refseq: | NM_175430 |
| Nearest Ensembl: | ENSMUSG00000039963 |
| Gene Name: | coiled-coil domain containing 40 |
| Gene Alias: | B930008I02Rik |
| Gene Description: | coiled-coil domain containing 40 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
