Difference between revisions of "TSS:Mm 100425.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF231619:-273 MA467196:-273 LF199019:-289 MA434596:-289 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-273 |
| − | |distance_to_tss= | + | |distance_to_tss=43672 |
|end=119447582 | |end=119447582 | ||
|end_of_center_position=119447563 | |end_of_center_position=119447563 | ||
| − | |entrez_id= | + | |entrez_id=78439 |
|gc_percent=0.452736 | |gc_percent=0.452736 | ||
| − | |gene_alias= | + | |gene_alias=Gm44935 |
| − | |gene_description= | + | |gene_description=RIKEN cDNA A930037H05 gene |
| − | |gene_name= | + | |gene_name=A930037H05Rik |
| − | |gene_type= | + | |gene_type=ncRNA |
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSMUSG00000109408 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_153849 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_153849 |
| − | |nearest_unigene=Mm. | + | |nearest_unigene=Mm.440446 |
| − | |num_trans= | + | |num_trans=4 |
|species=mouse | |species=mouse | ||
|start=119447543 | |start=119447543 | ||
|start_of_center_position=119447562 | |start_of_center_position=119447562 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF231619 MA467196 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_100425.1 | |tss_id=mm_100425.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:16, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 119447562 |
|---|---|
| End of the center position in the TSS region: | 119447563 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF231619 MA467196 |
|---|---|
| Distance: | -273 |
| Num_trans: | 4 |
| All_trans: | LF231619:-273 MA467196:-273 LF199019:-289 MA434596:-289 |
TATA-Box annotation
| Distance to TSS: | 43672 |
|---|---|
| Nearest PromoterID: | NR_153849 |
| Entrez ID: | 78439 |
| Nearest Unigene: | Mm.440446 |
| Nearest Refseq: | NR_153849 |
| Nearest Ensembl: | ENSMUSG00000109408 |
| Gene Name: | A930037H05Rik |
| Gene Alias: | Gm44935 |
| Gene Description: | RIKEN cDNA A930037H05 gene |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.452736 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
