Difference between revisions of "TSS:Mm 100464.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000132197.7:7 ENSMUST00000026434.12:376 NM_001085498 | + | |all_trans=LF199020:6 MA434597:6 ENSMUST00000132197.7:7 ENSMUST00000026434.12:376 NM_001085498:376 BC147754:381 BC147755:381 ENSMUST00000124199.7:396 AK172123:410 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=6 |
|distance_to_tss=-381 | |distance_to_tss=-381 | ||
|end=119913434 | |end=119913434 | ||
| + | |end_of_center_position=119913429 | ||
|entrez_id=208092 | |entrez_id=208092 | ||
|gc_percent=0.59204 | |gc_percent=0.59204 | ||
| Line 11: | Line 12: | ||
|gene_description=charged multivesicular body protein 6 | |gene_description=charged multivesicular body protein 6 | ||
|gene_id=208092 | |gene_id=208092 | ||
| − | |gene_name= | + | |gene_name=Chmp6 |
|gene_source=MGI:3583942 | |gene_source=MGI:3583942 | ||
|gene_symbol=Chmp6 | |gene_symbol=Chmp6 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_001085498 | |nearest_refseq=NM_001085498 | ||
|nearest_unigene=Mm.306673 | |nearest_unigene=Mm.306673 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=119913423 | |start=119913423 | ||
| + | |start_of_center_position=119913428 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF199020 MA434597 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100464.1 | |tss_id=mm_100464.1 | ||
Latest revision as of 16:17, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 119913428 |
|---|---|
| End of the center position in the TSS region: | 119913429 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF199020 MA434597 |
|---|---|
| Distance: | 6 |
| Num_trans: | 9 |
| All_trans: | LF199020:6 MA434597:6 ENSMUST00000132197.7:7 ENSMUST00000026434.12:376 NM_001085498:376 BC147754:381 BC147755:381 ENSMUST00000124199.7:396 AK172123:410 |
TATA-Box annotation
| Distance to TSS: | -381 |
|---|---|
| Nearest PromoterID: | NM_001085498 |
| Entrez ID: | 208092 |
| Nearest Unigene: | Mm.306673 |
| Nearest Refseq: | NM_001085498 |
| Nearest Ensembl: | ENSMUSG00000025371 |
| Gene Name: | Chmp6 |
| Gene Alias: | 2400004G01Rik |
| Gene Description: | charged multivesicular body protein 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
