Difference between revisions of "TSS:Mm 100465.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000026434.12:0 ENSMUST00000124199.7:0 NM_001085498 | + | |all_trans=ENSMUST00000026434.12:0 ENSMUST00000124199.7:0 NM_001085498:0 BC147754:0 BC147755:0 AK172123:0 ENSMUST00000148232.1:161 LF231621:301 MA467198:301 ENSMUST00000132197.7:-362 LF199020:-363 MA434597:-363 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001085498 | |nearest_refseq=NM_001085498 | ||
|nearest_unigene=Mm.306673 | |nearest_unigene=Mm.306673 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=119913802 | |start=119913802 | ||
|start_of_center_position=119913828 | |start_of_center_position=119913828 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000026434.12 ENSMUST00000124199.7 NM_001085498 | + | |transcript_name=ENSMUST00000026434.12 ENSMUST00000124199.7 NM_001085498 BC147754 BC147755 AK172123 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100465.1 | |tss_id=mm_100465.1 | ||
Revision as of 16:17, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 119913828 |
|---|---|
| End of the center position in the TSS region: | 119913829 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000026434.12 ENSMUST00000124199.7 NM_001085498 BC147754 BC147755 AK172123 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENSMUST00000026434.12:0 ENSMUST00000124199.7:0 NM_001085498:0 BC147754:0 BC147755:0 AK172123:0 ENSMUST00000148232.1:161 LF231621:301 MA467198:301 ENSMUST00000132197.7:-362 LF199020:-363 MA434597:-363 |
TATA-Box annotation
| Distance to TSS: | 18 |
|---|---|
| Nearest PromoterID: | NM_001085498 |
| Entrez ID: | 208092 |
| Nearest Unigene: | Mm.306673 |
| Nearest Refseq: | NM_001085498 |
| Nearest Ensembl: | ENSMUSG00000025371 |
| Gene Name: | charged multivesicular body protein 6 |
| Gene Alias: | 2400004G01Rik |
| Gene Description: | charged multivesicular body protein 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
