Difference between revisions of "TSS:Mm 100466.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK162346:355 ENSMUST00000137055.1:394 ENSMUST00000139814.7:-482 | + | |all_trans=LF231622:-283 MA467199:-283 AK162346:355 ENSMUST00000137055.1:394 ENSMUST00000139814.7:-482 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=-283 |
|distance_to_tss=2510 | |distance_to_tss=2510 | ||
|end=119916337 | |end=119916337 | ||
| Line 12: | Line 12: | ||
|gene_description=charged multivesicular body protein 6 | |gene_description=charged multivesicular body protein 6 | ||
|gene_id=208092 | |gene_id=208092 | ||
| − | |gene_name= | + | |gene_name=Chmp6 |
|gene_source=MGI:3583942 | |gene_source=MGI:3583942 | ||
|gene_symbol=Chmp6 | |gene_symbol=Chmp6 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001085498 | |nearest_refseq=NM_001085498 | ||
|nearest_unigene=Mm.306673 | |nearest_unigene=Mm.306673 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=119916303 | |start=119916303 | ||
|start_of_center_position=119916320 | |start_of_center_position=119916320 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF231622 MA467199 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100466.1 | |tss_id=mm_100466.1 | ||
Latest revision as of 16:17, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 119916320 |
|---|---|
| End of the center position in the TSS region: | 119916321 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF231622 MA467199 |
|---|---|
| Distance: | -283 |
| Num_trans: | 5 |
| All_trans: | LF231622:-283 MA467199:-283 AK162346:355 ENSMUST00000137055.1:394 ENSMUST00000139814.7:-482 |
TATA-Box annotation
| Distance to TSS: | 2510 |
|---|---|
| Nearest PromoterID: | NM_001085498 |
| Entrez ID: | 208092 |
| Nearest Unigene: | Mm.306673 |
| Nearest Refseq: | NM_001085498 |
| Nearest Ensembl: | ENSMUSG00000025371 |
| Gene Name: | Chmp6 |
| Gene Alias: | 2400004G01Rik |
| Gene Description: | charged multivesicular body protein 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
