Difference between revisions of "TSS:Mm 100469.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|R75030= | |R75030= | ||
| − | |all_trans=NM_001037754:0 NM_001037755:0 NM_130862 | + | |all_trans=NM_001037754:0 NM_001037755:0 NM_130862:0 AK160401:0 AK145924:0 AK049469:0 AK170190:0 BC006620:2 BC016411:2 ENSMUST00000152523.7:17 AF390178:35 AF390179:35 ENSMUST00000106231.7:-320 ENSMUST00000075180.11:-320 ENSMUST00000103021.9:-320 ENSMUST00000026436.9:-320 ENSMUST00000106233.1:-320 ENSMUST00000146566.1:373 AK158579:373 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 10: | Line 10: | ||
|entrez_id=108100 | |entrez_id=108100 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=IRSp53 | + | |gene_alias=IRSp53{{!}}R75030 |
|gene_description=brain-specific angiogenesis inhibitor 1-associated protein 2 | |gene_description=brain-specific angiogenesis inhibitor 1-associated protein 2 | ||
|gene_id=108100 | |gene_id=108100 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=MGI:2137336 | |hgnc_mgi_id=MGI:2137336 | ||
|nearest_ensembl=ENSMUSG00000025372 | |nearest_ensembl=ENSMUSG00000025372 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001037755 |
|nearest_refseq=NM_130862 | |nearest_refseq=NM_130862 | ||
|nearest_unigene=Mm.197534 | |nearest_unigene=Mm.197534 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=mouse | |species=mouse | ||
|start=119943082 | |start=119943082 | ||
|start_of_center_position=119943090 | |start_of_center_position=119943090 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-35(GGCTATAAAAGC,-,0.00) |
| − | |transcript_name=NM_001037754 NM_001037755 NM_130862 | + | |transcript_name=NM_001037754 NM_001037755 NM_130862 AK160401 AK145924 AK049469 AK170190 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100469.1 | |tss_id=mm_100469.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q3TV50 Q3UKP6 Q8BKX1 | + | |uniprot_id=Q3TV50 Q3UKP6 Q8BKX1 |
}} | }} | ||
Revision as of 16:17, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 119943090 |
|---|---|
| End of the center position in the TSS region: | 119943091 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001037754 NM_001037755 NM_130862 AK160401 AK145924 AK049469 AK170190 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | NM_001037754:0 NM_001037755:0 NM_130862:0 AK160401:0 AK145924:0 AK049469:0 AK170190:0 BC006620:2 BC016411:2 ENSMUST00000152523.7:17 AF390178:35 AF390179:35 ENSMUST00000106231.7:-320 ENSMUST00000075180.11:-320 ENSMUST00000103021.9:-320 ENSMUST00000026436.9:-320 ENSMUST00000106233.1:-320 ENSMUST00000146566.1:373 AK158579:373 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_001037755 |
| Entrez ID: | 108100 |
| Nearest Unigene: | Mm.197534 |
| Nearest Refseq: | NM_130862 |
| Nearest Ensembl: | ENSMUSG00000025372 |
| Gene Name: | brain-specific angiogenesis inhibitor 1-associated protein 2 |
| Gene Alias: | IRSp53|R75030 |
| Gene Description: | brain-specific angiogenesis inhibitor 1-associated protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(GGCTATAAAAGC,-,0.00) |
