Difference between revisions of "TSS:Mm 100493.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Hrs= | |Hrs= | ||
|ZFYVE8= | |ZFYVE8= | ||
| − | |all_trans=AK166441:0 AK046299:0 D50050:0 BC003239:0 AK145031:0 ENSMUST00000141826.1:-21 ENSMUST00000140862.6:-21 ENSMUST00000106205. | + | |all_trans=AK166441:0 AK046299:0 D50050:0 BC003239:0 AK145031:0 ENSMUST00000141826.1:-21 ENSMUST00000140862.6:-21 ENSMUST00000106205.8:-21 ENSMUST00000106203.8:-21 NM_001159328:-21 NM_008244:-21 AK195076:22 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| Line 11: | Line 11: | ||
|entrez_id=15239 | |entrez_id=15239 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| − | |gene_alias=Hgr | + | |gene_alias=Hgr{{!}}Hrs{{!}}ZFYVE8{{!}}tn |
|gene_description=HGF-regulated tyrosine kinase substrate | |gene_description=HGF-regulated tyrosine kinase substrate | ||
|gene_id=15239 | |gene_id=15239 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:104681 | |hgnc_mgi_id=MGI:104681 | ||
|nearest_ensembl=ENSMUSG00000025793 | |nearest_ensembl=ENSMUSG00000025793 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_008244 |
|nearest_refseq=NM_008244 | |nearest_refseq=NM_008244 | ||
|nearest_unigene=Mm.7919 | |nearest_unigene=Mm.7919 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=120467655 | |start=120467655 | ||
Revision as of 16:18, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 120467687 |
|---|---|
| End of the center position in the TSS region: | 120467688 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK166441 AK046299 D50050 BC003239 AK145031 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | AK166441:0 AK046299:0 D50050:0 BC003239:0 AK145031:0 ENSMUST00000141826.1:-21 ENSMUST00000140862.6:-21 ENSMUST00000106205.8:-21 ENSMUST00000106203.8:-21 NM_001159328:-21 NM_008244:-21 AK195076:22 |
TATA-Box annotation
| Distance to TSS: | 52 |
|---|---|
| Nearest PromoterID: | NM_008244 |
| Entrez ID: | 15239 |
| Nearest Unigene: | Mm.7919 |
| Nearest Refseq: | NM_008244 |
| Nearest Ensembl: | ENSMUSG00000025793 |
| Gene Name: | HGF-regulated tyrosine kinase substrate |
| Gene Alias: | Hgr|Hrs|ZFYVE8|tn |
| Gene Description: | HGF-regulated tyrosine kinase substrate |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
