Difference between revisions of "TSS:Mm 100501.1"
From referenceTSS
| Line 3: | Line 3: | ||
|MRP-L12= | |MRP-L12= | ||
|Rpml12= | |Rpml12= | ||
| − | |all_trans= | + | |all_trans=AK028168:0 AK002757:0 AK168337:0 AK005328:0 BC005712:0 BC019565:0 AK166969:-11 NM_027204:-15 AK134816:-15 ENSMUST00000043627.7:-39 ENSMUST00000137619.1:331 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=37 |
|end=120484696 | |end=120484696 | ||
|end_of_center_position=120484674 | |end_of_center_position=120484674 | ||
|entrez_id=56282 | |entrez_id=56282 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias=0610034O11Rik | + | |gene_alias=0610034O11Rik{{!}}1500031N16Rik{{!}}L12mt{{!}}MRP-L12{{!}}Rpml12 |
|gene_description=mitochondrial ribosomal protein L12 | |gene_description=mitochondrial ribosomal protein L12 | ||
|gene_id=56282 | |gene_id=56282 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_027204 | |nearest_refseq=NM_027204 | ||
|nearest_unigene=Mm.133851 | |nearest_unigene=Mm.133851 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=mouse | |species=mouse | ||
|start=120484651 | |start=120484651 | ||
|start_of_center_position=120484673 | |start_of_center_position=120484673 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AK028168 AK002757 AK168337 AK005328 BC005712 BC019565 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100501.1 | |tss_id=mm_100501.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:18, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 120484673 |
|---|---|
| End of the center position in the TSS region: | 120484674 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK028168 AK002757 AK168337 AK005328 BC005712 BC019565 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | AK028168:0 AK002757:0 AK168337:0 AK005328:0 BC005712:0 BC019565:0 AK166969:-11 NM_027204:-15 AK134816:-15 ENSMUST00000043627.7:-39 ENSMUST00000137619.1:331 |
TATA-Box annotation
| Distance to TSS: | 37 |
|---|---|
| Nearest PromoterID: | NM_027204 |
| Entrez ID: | 56282 |
| Nearest Unigene: | Mm.133851 |
| Nearest Refseq: | NM_027204 |
| Nearest Ensembl: | ENSMUSG00000039640 |
| Gene Name: | mitochondrial ribosomal protein L12 |
| Gene Alias: | 0610034O11Rik|1500031N16Rik|L12mt|MRP-L12|Rpml12 |
| Gene Description: | mitochondrial ribosomal protein L12 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
