Difference between revisions of "TSS:Mm 100531.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000106194.7:170 ENSMUST00000106195.2:170 NM_153288:170 | + | |all_trans=ENSMUST00000106194.7:170 ENSMUST00000106195.2:170 NM_153288:170 NM_001347617:170 NM_001347616:170 AK141698:170 ENSMUST00000061309.4:198 AB085945:202 BC134361:202 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| Line 9: | Line 9: | ||
|entrez_id=208990 | |entrez_id=208990 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| − | |gene_alias= | + | |gene_alias=PPL7{{!}}mPPL7 |
|gene_description=neuropeptide B | |gene_description=neuropeptide B | ||
|gene_id=208990 | |gene_id=208990 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:2387153 | |hgnc_mgi_id=MGI:2387153 | ||
|nearest_ensembl=ENSMUSG00000044034 | |nearest_ensembl=ENSMUSG00000044034 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001347617 |
|nearest_refseq=NM_153288 | |nearest_refseq=NM_153288 | ||
|nearest_unigene=Mm.29444 | |nearest_unigene=Mm.29444 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=120608300 | |start=120608300 | ||
|start_of_center_position=120608303 | |start_of_center_position=120608303 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000106194.7 ENSMUST00000106195.2 NM_153288 | + | |transcript_name=ENSMUST00000106194.7 ENSMUST00000106195.2 NM_153288 NM_001347617 NM_001347616 AK141698 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100531.1 | |tss_id=mm_100531.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A2ABY0 Q3UR83 Q8K4P1 | + | |uniprot_id=A2ABY0 A2ABY2 Q3UR83 Q8K4P1 |
}} | }} | ||
Revision as of 16:19, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 120608303 |
|---|---|
| End of the center position in the TSS region: | 120608304 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000106194.7 ENSMUST00000106195.2 NM_153288 NM_001347617 NM_001347616 AK141698 |
|---|---|
| Distance: | 170 |
| Num_trans: | 9 |
| All_trans: | ENSMUST00000106194.7:170 ENSMUST00000106195.2:170 NM_153288:170 NM_001347617:170 NM_001347616:170 AK141698:170 ENSMUST00000061309.4:198 AB085945:202 BC134361:202 |
TATA-Box annotation
| Distance to TSS: | -173 |
|---|---|
| Nearest PromoterID: | NM_001347617 |
| Entrez ID: | 208990 |
| Nearest Unigene: | Mm.29444 |
| Nearest Refseq: | NM_153288 |
| Nearest Ensembl: | ENSMUSG00000044034 |
| Gene Name: | neuropeptide B |
| Gene Alias: | PPL7|mPPL7 |
| Gene Description: | neuropeptide B |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
