Difference between revisions of "TSS:Mm 100572.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENSMUST00000105046.3:-291 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance=- | + | |distance=-291 |
|distance_to_tss=21109 | |distance_to_tss=21109 | ||
|end=120763106 | |end=120763106 | ||
| Line 11: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase | |gene_description=RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase | ||
| + | |gene_id= | ||
|gene_name=Rfng | |gene_name=Rfng | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id= | ||
|nearest_ensembl=ENSMUSG00000025158 | |nearest_ensembl=ENSMUSG00000025158 | ||
|nearest_promoter_id=NM_009053 | |nearest_promoter_id=NM_009053 | ||
|nearest_refseq=NM_009053 | |nearest_refseq=NM_009053 | ||
|nearest_unigene=Mm.871 | |nearest_unigene=Mm.871 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=mouse | |species=mouse | ||
|start=120763084 | |start=120763084 | ||
|start_of_center_position=120763095 | |start_of_center_position=120763095 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENSMUST00000105046.3 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100572.1 | |tss_id=mm_100572.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=Q566K0 | ||
}} | }} | ||
Revision as of 16:20, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 120763095 |
|---|---|
| End of the center position in the TSS region: | 120763096 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000105046.3 |
|---|---|
| Distance: | -291 |
| Num_trans: | 1 |
| All_trans: | ENSMUST00000105046.3:-291 |
TATA-Box annotation
| Distance to TSS: | 21109 |
|---|---|
| Nearest PromoterID: | NM_009053 |
| Entrez ID: | 19719 |
| Nearest Unigene: | Mm.871 |
| Nearest Refseq: | NM_009053 |
| Nearest Ensembl: | ENSMUSG00000025158 |
| Gene Name: | Rfng |
| Gene Alias: | - |
| Gene Description: | RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
