Difference between revisions of "TSS:Mm 100579.1"
From referenceTSS
| Line 3: | Line 3: | ||
|R75577= | |R75577= | ||
|Sgn1= | |Sgn1= | ||
| − | |all_trans=ENSMUST00000132422.1:0 NM_001177874:0 | + | |all_trans=ENSMUST00000132422.1:0 NM_001177874:0 NM_001346709:0 NM_001363440:0 ENSMUST00000153678.7:3 ENSMUST00000100134.9:3 AK088490:3 ENSMUST00000208737.1:13 ENSMUST00000116305.7:33 BC103782:33 NM_145370:228 ENSMUST00000172809.1:243 BC003350:243 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-5 |
|end=120784272 | |end=120784272 | ||
|end_of_center_position=120784265 | |end_of_center_position=120784265 | ||
|entrez_id=209318 | |entrez_id=209318 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=Cops1 | + | |gene_alias=Cops1{{!}}Csn1{{!}}R75577{{!}}Sgn1 |
|gene_description=G protein pathway suppressor 1 | |gene_description=G protein pathway suppressor 1 | ||
|gene_id=209318 | |gene_id=209318 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=MGI:2384801 | |hgnc_mgi_id=MGI:2384801 | ||
|nearest_ensembl=ENSMUSG00000025156 | |nearest_ensembl=ENSMUSG00000025156 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001177874 |
|nearest_refseq=NM_145370 | |nearest_refseq=NM_145370 | ||
|nearest_unigene=Mm.30195 | |nearest_unigene=Mm.30195 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=120784257 | |start=120784257 | ||
|start_of_center_position=120784264 | |start_of_center_position=120784264 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-55(GCCCCTTTAAGA,-,0.00),-52(CCTTTAAGAGTG,+,0.00) |
| − | |transcript_name=ENSMUST00000132422.1 NM_001177874 | + | |transcript_name=ENSMUST00000132422.1 NM_001177874 NM_001346709 NM_001363440 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100579.1 | |tss_id=mm_100579.1 | ||
Revision as of 16:20, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 120784264 |
|---|---|
| End of the center position in the TSS region: | 120784265 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000132422.1 NM_001177874 NM_001346709 NM_001363440 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENSMUST00000132422.1:0 NM_001177874:0 NM_001346709:0 NM_001363440:0 ENSMUST00000153678.7:3 ENSMUST00000100134.9:3 AK088490:3 ENSMUST00000208737.1:13 ENSMUST00000116305.7:33 BC103782:33 NM_145370:228 ENSMUST00000172809.1:243 BC003350:243 |
TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NM_001177874 |
| Entrez ID: | 209318 |
| Nearest Unigene: | Mm.30195 |
| Nearest Refseq: | NM_145370 |
| Nearest Ensembl: | ENSMUSG00000025156 |
| Gene Name: | G protein pathway suppressor 1 |
| Gene Alias: | Cops1|Csn1|R75577|Sgn1 |
| Gene Description: | G protein pathway suppressor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -55(GCCCCTTTAAGA,-,0.00),-52(CCTTTAAGAGTG,+,0.00) |
