Difference between revisions of "TSS:Mm 100581.1"
From referenceTSS
| Line 3: | Line 3: | ||
|R75577= | |R75577= | ||
|Sgn1= | |Sgn1= | ||
| − | |all_trans= | + | |all_trans=NM_145370:47 ENSMUST00000172809.1:62 BC003350:62 ENSMUST00000116305.7:-137 BC103782:-137 ENSMUST00000208737.1:-157 ENSMUST00000153678.7:-167 ENSMUST00000100134.9:-167 AK088490:-167 ENSMUST00000132422.1:-170 NM_001177874:-172 NM_001346709:-172 NM_001363440:-172 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.175 | |cpg_percent=0.175 | ||
| − | |distance= | + | |distance=47 |
| − | |distance_to_tss=- | + | |distance_to_tss=-53 |
|end=120784453 | |end=120784453 | ||
|end_of_center_position=120784448 | |end_of_center_position=120784448 | ||
|entrez_id=209318 | |entrez_id=209318 | ||
|gc_percent=0.850746 | |gc_percent=0.850746 | ||
| − | |gene_alias=Cops1 | + | |gene_alias=Cops1{{!}}Csn1{{!}}R75577{{!}}Sgn1 |
|gene_description=G protein pathway suppressor 1 | |gene_description=G protein pathway suppressor 1 | ||
|gene_id=209318 | |gene_id=209318 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_145370 | |nearest_refseq=NM_145370 | ||
|nearest_unigene=Mm.30195 | |nearest_unigene=Mm.30195 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=120784441 | |start=120784441 | ||
|start_of_center_position=120784447 | |start_of_center_position=120784447 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_145370 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100581.1 | |tss_id=mm_100581.1 | ||
Revision as of 16:20, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 120784447 |
|---|---|
| End of the center position in the TSS region: | 120784448 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_145370 |
|---|---|
| Distance: | 47 |
| Num_trans: | 13 |
| All_trans: | NM_145370:47 ENSMUST00000172809.1:62 BC003350:62 ENSMUST00000116305.7:-137 BC103782:-137 ENSMUST00000208737.1:-157 ENSMUST00000153678.7:-167 ENSMUST00000100134.9:-167 AK088490:-167 ENSMUST00000132422.1:-170 NM_001177874:-172 NM_001346709:-172 NM_001363440:-172 |
TATA-Box annotation
| Distance to TSS: | -53 |
|---|---|
| Nearest PromoterID: | NM_145370 |
| Entrez ID: | 209318 |
| Nearest Unigene: | Mm.30195 |
| Nearest Refseq: | NM_145370 |
| Nearest Ensembl: | ENSMUSG00000025156 |
| Gene Name: | G protein pathway suppressor 1 |
| Gene Alias: | Cops1|Csn1|R75577|Sgn1 |
| Gene Description: | G protein pathway suppressor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.175 |
| GC%: | 0.850746 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
