Difference between revisions of "TSS:Mm 100582.1"
From referenceTSS
| Line 3: | Line 3: | ||
|R75577= | |R75577= | ||
|Sgn1= | |Sgn1= | ||
| − | |all_trans=ENSMUST00000172809.1:0 NM_145370 | + | |all_trans=ENSMUST00000172809.1:0 NM_145370:0 BC003350:0 ENSMUST00000116305.7:-194 BC103782:-194 ENSMUST00000208737.1:-214 ENSMUST00000153678.7:-224 ENSMUST00000100134.9:-224 AK088490:-224 ENSMUST00000132422.1:-227 NM_001177874:-229 NM_001346709:-229 NM_001363440:-229 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=34 |
|end=120784570 | |end=120784570 | ||
|end_of_center_position=120784535 | |end_of_center_position=120784535 | ||
|entrez_id=209318 | |entrez_id=209318 | ||
|gc_percent=0.81592 | |gc_percent=0.81592 | ||
| − | |gene_alias=Cops1 | + | |gene_alias=Cops1{{!}}Csn1{{!}}R75577{{!}}Sgn1 |
|gene_description=G protein pathway suppressor 1 | |gene_description=G protein pathway suppressor 1 | ||
|gene_id=209318 | |gene_id=209318 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_145370 | |nearest_refseq=NM_145370 | ||
|nearest_unigene=Mm.30195 | |nearest_unigene=Mm.30195 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=120784498 | |start=120784498 | ||
|start_of_center_position=120784534 | |start_of_center_position=120784534 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000172809.1 NM_145370 | + | |transcript_name=ENSMUST00000172809.1 NM_145370 BC003350 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100582.1 | |tss_id=mm_100582.1 | ||
Revision as of 16:20, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 120784534 |
|---|---|
| End of the center position in the TSS region: | 120784535 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000172809.1 NM_145370 BC003350 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENSMUST00000172809.1:0 NM_145370:0 BC003350:0 ENSMUST00000116305.7:-194 BC103782:-194 ENSMUST00000208737.1:-214 ENSMUST00000153678.7:-224 ENSMUST00000100134.9:-224 AK088490:-224 ENSMUST00000132422.1:-227 NM_001177874:-229 NM_001346709:-229 NM_001363440:-229 |
TATA-Box annotation
| Distance to TSS: | 34 |
|---|---|
| Nearest PromoterID: | NM_145370 |
| Entrez ID: | 209318 |
| Nearest Unigene: | Mm.30195 |
| Nearest Refseq: | NM_145370 |
| Nearest Ensembl: | ENSMUSG00000025156 |
| Gene Name: | G protein pathway suppressor 1 |
| Gene Alias: | Cops1|Csn1|R75577|Sgn1 |
| Gene Description: | G protein pathway suppressor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.81592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
