Difference between revisions of "TSS:Mm 100604.1"
From referenceTSS
| Line 4: | Line 4: | ||
|ILF= | |ILF= | ||
|Ilf1= | |Ilf1= | ||
| − | |all_trans=ENSMUST00000106113.1:0 NM_001080932:0 EU882160:0 AK139325:0 AK150439:278 | + | |all_trans=ENSMUST00000106113.1:0 NM_001080932:0 NM_001363033:0 EU882160:0 AK139325:0 AK150439:278 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.205 | |cpg_percent=0.205 | ||
| Line 13: | Line 13: | ||
|entrez_id=68837 | |entrez_id=68837 | ||
|gc_percent=0.81592 | |gc_percent=0.81592 | ||
| − | |gene_alias=1110054H05Rik | + | |gene_alias=1110054H05Rik{{!}}5730434B08Rik{{!}}6230415M23Rik{{!}}ILF{{!}}Ilf1 |
|gene_description=forkhead box K2 | |gene_description=forkhead box K2 | ||
|gene_id=68837 | |gene_id=68837 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_001080932 | |nearest_refseq=NM_001080932 | ||
|nearest_unigene=Mm.209750 | |nearest_unigene=Mm.209750 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=mouse | |species=mouse | ||
|start=121259983 | |start=121259983 | ||
|start_of_center_position=121260019 | |start_of_center_position=121260019 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000106113.1 NM_001080932 EU882160 AK139325 | + | |transcript_name=ENSMUST00000106113.1 NM_001080932 NM_001363033 EU882160 AK139325 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100604.1 | |tss_id=mm_100604.1 | ||
Revision as of 16:20, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 121260019 |
|---|---|
| End of the center position in the TSS region: | 121260020 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000106113.1 NM_001080932 NM_001363033 EU882160 AK139325 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | ENSMUST00000106113.1:0 NM_001080932:0 NM_001363033:0 EU882160:0 AK139325:0 AK150439:278 |
TATA-Box annotation
| Distance to TSS: | 32 |
|---|---|
| Nearest PromoterID: | NM_001080932 |
| Entrez ID: | 68837 |
| Nearest Unigene: | Mm.209750 |
| Nearest Refseq: | NM_001080932 |
| Nearest Ensembl: | ENSMUSG00000039275 |
| Gene Name: | forkhead box K2 |
| Gene Alias: | 1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1 |
| Gene Description: | forkhead box K2 |
| Gene Type: | protein-coding |
| CpG%: | 0.205 |
| GC%: | 0.81592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
