Difference between revisions of "TSS:Mm 10064.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000180420.2:-140 | + | |all_trans=ENSMUST00000180420.2:-140 NR_166150:-176 AK014513:222 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| Line 9: | Line 9: | ||
|entrez_id=387201 | |entrez_id=387201 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
| − | |gene_alias=Mirn205 | + | |gene_alias=Mirn205{{!}}mir-205{{!}}mmu-mir-205 |
|gene_description=microRNA 205 | |gene_description=microRNA 205 | ||
|gene_id= | |gene_id= | ||
| − | |gene_name= | + | |gene_name=Mir205 host gene |
|gene_source=MGI:1918050 | |gene_source=MGI:1918050 | ||
| − | |gene_symbol= | + | |gene_symbol=Mir205hg |
| − | |gene_synonyms= | + | |gene_synonyms=4631405K08Rik |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=MGI:1918050 | |hgnc_mgi_id=MGI:1918050 | ||
| Line 29: | Line 29: | ||
|start_of_center_position=193510029 | |start_of_center_position=193510029 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=30(CCCTATAGAGCA,+,0.00) |
|transcript_name=ENSMUST00000180420.2 | |transcript_name=ENSMUST00000180420.2 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 16:21, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 193510029 |
|---|---|
| End of the center position in the TSS region: | 193510030 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000180420.2 |
|---|---|
| Distance: | -140 |
| Num_trans: | 3 |
| All_trans: | ENSMUST00000180420.2:-140 NR_166150:-176 AK014513:222 |
TATA-Box annotation
| Distance to TSS: | -2499 |
|---|---|
| Nearest PromoterID: | NR_029592 |
| Entrez ID: | 387201 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_029592 |
| Nearest Ensembl: | ENSMUSG00000065533 |
| Gene Name: | Mir205 host gene |
| Gene Alias: | Mirn205|mir-205|mmu-mir-205 |
| Gene Description: | microRNA 205 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 30(CCCTATAGAGCA,+,0.00) |
