Difference between revisions of "TSS:Mm 100641.1"
From referenceTSS
| Line 2: | Line 2: | ||
|4933440L20Rik= | |4933440L20Rik= | ||
|RNDEu-3= | |RNDEu-3= | ||
| − | |all_trans=NM_029049 | + | |all_trans=NM_029049:0 BC145091:0 BC171943:0 ENSMUST00000125199.1:23 ENSMUST00000036690.6:23 AK017136:23 AK015440:37 AK016824:39 AB235902:79 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| Line 11: | Line 11: | ||
|entrez_id=74675 | |entrez_id=74675 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| − | |gene_alias=4930451E13Rik | + | |gene_alias=4930451E13Rik{{!}}4933440L20Rik{{!}}RNDEu-3 |
|gene_description=patched domain containing 3 | |gene_description=patched domain containing 3 | ||
|gene_id=74675 | |gene_id=74675 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_029049 | |nearest_refseq=NM_029049 | ||
|nearest_unigene=Mm.61213 | |nearest_unigene=Mm.61213 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=121830215 | |start=121830215 | ||
|start_of_center_position=121830219 | |start_of_center_position=121830219 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=NM_029049 | + | |transcript_name=NM_029049 BC145091 BC171943 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100641.1 | |tss_id=mm_100641.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q0EEE2 |
}} | }} | ||
Revision as of 16:21, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 121830219 |
|---|---|
| End of the center position in the TSS region: | 121830220 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_029049 BC145091 BC171943 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | NM_029049:0 BC145091:0 BC171943:0 ENSMUST00000125199.1:23 ENSMUST00000036690.6:23 AK017136:23 AK015440:37 AK016824:39 AB235902:79 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_029049 |
| Entrez ID: | 74675 |
| Nearest Unigene: | Mm.61213 |
| Nearest Refseq: | NM_029049 |
| Nearest Ensembl: | ENSMUSG00000039198 |
| Gene Name: | patched domain containing 3 |
| Gene Alias: | 4930451E13Rik|4933440L20Rik|RNDEu-3 |
| Gene Description: | patched domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
