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Difference between revisions of "TSS:Mm 100656.1"

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(Created page with "{{TSSDetail |all_trans=AB341341:31 AB341343:-95 ENSMUST00000081318.12:-234 AK133558:-234 ENSMUST00000144359.7:-238 BC046305:-238 ENSMUST00000138126.7:-248 AK170090:-248 ENSMUS...")
 
 
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{{TSSDetail
 
{{TSSDetail
−
|all_trans=AB341341:31 AB341343:-95 ENSMUST00000081318.12:-234 AK133558:-234 ENSMUST00000144359.7:-238 BC046305:-238 ENSMUST00000138126.7:-248 AK170090:-248 ENSMUST00000142315.7:-251 ENSMUST00000118627.1:-251 AK082866:-251 BC106124:-254 AK129159:-257 ENSMUST00000144778.7:-266 BC099677:-266 ENSMUST00000132893.7:-287 AK046135:-287 AK046373:-287 ENSMUST00000066391.13:-290 NM_030207:-290 uc007hrt.1:-290 uc007hru.1:-290 uc007hrx.1:-290 uc007hsa.1:-290 uc007hsb.1:-290
+
|all_trans=AB341341:31 LF225570:-57 MA461147:-57 AB341343:-95 ENSMUST00000081318.12:-234 AK133558:-234 ENSMUST00000144359.7:-238 BC046305:-238 ENSMUST00000138126.7:-248 AK170090:-248 ENSMUST00000142315.7:-251 ENSMUST00000118627.1:-251 AK082866:-251 BC106124:-254 AK129159:-257 ENSMUST00000144778.7:-266 BC099677:-266 ENSMUST00000132893.7:-287 AK046135:-287 AK046373:-287 ENSMUST00000066391.13:-290 NM_030207:-430
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.06
 
|cpg_percent=0.06
 
|distance=31
 
|distance=31
−
|distance_to_tss=313
+
|distance_to_tss=453
 
|end=3193173
 
|end=3193173
 +
|end_of_center_position=3193151
 
|entrez_id=78887
 
|entrez_id=78887
 
|gc_percent=0.587065
 
|gc_percent=0.587065
 
|gene_alias=-
 
|gene_alias=-
−
|gene_description="Sfi1 homolog, spindle assembly associated (yeast)"
+
|gene_description=Sfi1 homolog, spindle assembly associated (yeast)
 
|gene_name=Sfi1
 
|gene_name=Sfi1
 
|gene_type=protein-coding
 
|gene_type=protein-coding
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|nearest_refseq=NM_030207
 
|nearest_refseq=NM_030207
 
|nearest_unigene=Mm.394071
 
|nearest_unigene=Mm.394071
−
|num_trans=25
+
|num_trans=22
 
|species=mouse
 
|species=mouse
 
|start=3193127
 
|start=3193127
 +
|start_of_center_position=3193150
 
|strand=-
 
|strand=-
 
|transcript_name=AB341341
 
|transcript_name=AB341341

Latest revision as of 16:22, 19 June 2021

Basic information about the TSS

TSS ID:mm_100656.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:3193127
End:3193173
Strand:-
TSS Score:1
Start of the center position in the TSS region:3193150
End of the center position in the TSS region:3193151



Gene and protein annotation

Transcript_name:AB341341
Distance:31
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Gene_name:Sfi1
Gene_symbol:
Gene_synonyms:
Gene_source:



Transcript annotation

Transcript_name:AB341341
Distance:31
Num_trans:22
All_trans:AB341341:31 LF225570:-57 MA461147:-57 AB341343:-95 ENSMUST00000081318.12:-234 AK133558:-234 ENSMUST00000144359.7:-238 BC046305:-238 ENSMUST00000138126.7:-248 AK170090:-248 ENSMUST00000142315.7:-251 ENSMUST00000118627.1:-251 AK082866:-251 BC106124:-254 AK129159:-257 ENSMUST00000144778.7:-266 BC099677:-266 ENSMUST00000132893.7:-287 AK046135:-287 AK046373:-287 ENSMUST00000066391.13:-290 NM_030207:-430



TATA-Box annotation

Distance to TSS:453
Nearest PromoterID:NM_030207
Entrez ID:78887
Nearest Unigene:Mm.394071
Nearest Refseq:NM_030207
Nearest Ensembl:ENSMUSG00000023764
Gene Name:Sfi1
Gene Alias:-
Gene Description:Sfi1 homolog, spindle assembly associated (yeast)
Gene Type:protein-coding
CpG%:0.06
GC%:0.587065
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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