Difference between revisions of "TSS:Mm 100665.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Crkd= | |Crkd= | ||
|Hgfl= | |Hgfl= | ||
| − | |all_trans=ENSMUST00000155332.1:3 AK029003:3 | + | |all_trans=NR_165248:0 ENSMUST00000155332.1:3 AK029003:3 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=460 | |distance_to_tss=460 | ||
|end=3331201 | |end=3331201 | ||
| Line 12: | Line 12: | ||
|entrez_id=216505 | |entrez_id=216505 | ||
|gc_percent=0.452736 | |gc_percent=0.452736 | ||
| − | |gene_alias=1500004A08Rik | + | |gene_alias=1500004A08Rik{{!}}5830455E04Rik{{!}}Crkd{{!}}Hgfl |
|gene_description=phosphoinositide-3-kinase interacting protein 1 | |gene_description=phosphoinositide-3-kinase interacting protein 1 | ||
|gene_id=791413 | |gene_id=791413 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_178149 | |nearest_refseq=NM_178149 | ||
|nearest_unigene=Mm.390323 | |nearest_unigene=Mm.390323 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=mouse | |species=mouse | ||
|start=3331180 | |start=3331180 | ||
|start_of_center_position=3331190 | |start_of_center_position=3331190 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-92(GACTTTAAAAGG,-,0.00),-91(ACTTTAAAAGGG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=NR_165248 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100665.1 | |tss_id=mm_100665.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:22, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3331190 |
|---|---|
| End of the center position in the TSS region: | 3331191 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NR_165248 |
|---|---|
| Distance: | 0 |
| Num_trans: | 3 |
| All_trans: | NR_165248:0 ENSMUST00000155332.1:3 AK029003:3 |
TATA-Box annotation
| Distance to TSS: | 460 |
|---|---|
| Nearest PromoterID: | NM_178149 |
| Entrez ID: | 216505 |
| Nearest Unigene: | Mm.390323 |
| Nearest Refseq: | NM_178149 |
| Nearest Ensembl: | ENSMUSG00000034614 |
| Gene Name: | predicted gene 12592 |
| Gene Alias: | 1500004A08Rik|5830455E04Rik|Crkd|Hgfl |
| Gene Description: | phosphoinositide-3-kinase interacting protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.452736 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -92(GACTTTAAAAGG,-,0.00),-91(ACTTTAAAAGGG,+,0.00) |
