Difference between revisions of "TSS:Mm 100673.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000101640.9:0 ENSMUST00000101642.9:0 ENSMUST00000134576.7:0 ENSMUST00000147344.1:0 NM_173053:0 | + | |all_trans=ENSMUST00000101640.9:0 ENSMUST00000101642.9:0 ENSMUST00000134576.7:0 ENSMUST00000147344.1:0 NM_173053:0 NM_001361623:0 BC086629:0 AK146099:0 AB005132:0 AK208477:192 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=46 |
|end=3371409 | |end=3371409 | ||
|end_of_center_position=3371359 | |end_of_center_position=3371359 | ||
|entrez_id=16886 | |entrez_id=16886 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
| − | |gene_alias=Limk-2 | + | |gene_alias=Limk-2{{!}}whe |
|gene_description=LIM motif-containing protein kinase 2 | |gene_description=LIM motif-containing protein kinase 2 | ||
|gene_id=16886 | |gene_id=16886 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=3371358 | |start_of_center_position=3371358 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000101640.9 ENSMUST00000101642.9 ENSMUST00000134576.7 ENSMUST00000147344.1 NM_173053 | + | |transcript_name=ENSMUST00000101640.9 ENSMUST00000101642.9 ENSMUST00000134576.7 ENSMUST00000147344.1 NM_173053 NM_001361623 BC086629 AK146099 AB005132 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100673.1 | |tss_id=mm_100673.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=O54785 | + | |uniprot_id=O54785 Q5NC03 Q8BS94 |
|whe= | |whe= | ||
}} | }} | ||
Revision as of 16:22, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 3371358 |
|---|---|
| End of the center position in the TSS region: | 3371359 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000101640.9 ENSMUST00000101642.9 ENSMUST00000134576.7 ENSMUST00000147344.1 NM_173053 NM_001361623 BC086629 AK146099 AB005132 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | ENSMUST00000101640.9:0 ENSMUST00000101642.9:0 ENSMUST00000134576.7:0 ENSMUST00000147344.1:0 NM_173053:0 NM_001361623:0 BC086629:0 AK146099:0 AB005132:0 AK208477:192 |
TATA-Box annotation
| Distance to TSS: | 46 |
|---|---|
| Nearest PromoterID: | NM_173053 |
| Entrez ID: | 16886 |
| Nearest Unigene: | Mm.124176 |
| Nearest Refseq: | NM_010718 |
| Nearest Ensembl: | ENSMUSG00000020451 |
| Gene Name: | LIM motif-containing protein kinase 2 |
| Gene Alias: | Limk-2|whe |
| Gene Description: | LIM motif-containing protein kinase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
